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Modification Date/Time: | 2006-04-06 13:01:23 |
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Missense Discrepancy: | FALSE |
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Comments: Homology: gb|AAG08733.1|AE004947_3 (AE004947) probable DNA-binding protein [Pseudomonas aeruginosa PAO1]
Identities = 90/90 (100%), Positives = 90/90 (100%)
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Sequence:
ATGCGTAAACCAGAACTAGCCGCCGCTATCGCCGAAAAGGCCGATCTCACCAAGGAACAGGCCAATCGCGTT
CTCAACGCCCTGTTGGATGAAATCACCGGCGCGCTGAACCGCAAGGACAGCGTGACCCTGGTCGGTTTCGGC
ACCTTCCTGCAACGCCATCGCGGAGCCCGCACGGGGAAGAACCCGCAGACCGGCCAGCCGGTGAAGATCAAG
GCCAGCAACACCGTCGCCTTCAAGCCGGGCAAGGCCCTGCGCGACGCGGTCAACTGA |
Translation:
MRKPELAAAIAEKADLTKEQANRVLNALLDEITGALNRKDSVTLVGFGTFLQRHRGARTGKNPQTGQPVKIK
ASNTVAFKPGKALRDAVN* |
AnnotationID:5267 | GeneID:5262 |
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Modification Date/Time: |
2005-03-17 06:06:18 |
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GeneProduct: | putative DNA-binding protein HU family |
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Cell Localization Confidence Code: | 5 |
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Functional Category: | (11) DNA replication, recombination, modification and repair |
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Alternate Gene Product Name: | |
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Functional Category Confidence Code: | 5 |
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Secondary Functional Category(ies): | |
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Homology: | >gb|AAO58891.1| (AE016875) DNA-binding protein HU family [Pseudomonas syringae pv.
tomato str. DC3000]
Length = 111
Score = 166 bits (419), Expect = 3e-41
Identities = 81/90 (90%), Positives = 90/90 (100%)
>gb|AAN70878.1|AE016732_3 (AE016794) DNA-binding protein HU-alpha [Pseudomonas putida
KT2440]
Length = 99
Score = 150 bits (378), Expect = 2e-36
Identities = 76/90 (84%), Positives = 85/90 (94%), Gaps = 1/90 (1%)
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Structural Features: | pfam00216, Bac_DNA_binding, Bacterial DNA-binding protein.
CD-Length = 90 residues, 100.0% aligned
Score = 107 bits (269), Expect = 3e-25
Identities = 49/90 (54%), Positives = 62/90 (68%)
smart00411, BHL, bacterial (prokaryotic) histone like domain
CD-Length = 90 residues, 100.0% aligned
Score = 99.5 bits (248), Expect = 7e-23
Identities = 47/90 (52%), Positives = 60/90 (66%) |
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