ViewGene
Locus Name:
GeneID:
Location:

GeneID:5261
TrivialName: PA14_67740
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_67740
PAO1 Ortholog Locus:PA5129
Sequence Length:255
Protein Length:84
Start: 6049551
Stop: 6049297
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08514.1|AE004926_4 (AE004926) glutaredoxin [Pseudomonas aeruginosa PAO1]
Identities = 84/84 (100%), Positives = 84/84 (100%)
Sequence:
ATGCCGCCCGTCGTGATCTACACCACCGCCTGGTGTCCGTACTGCATCCGCGCCAAGCAGTTGCTGCAACGC
AAGGGCGTGGACTTCCAGGAGATCGCCTGCGACGGCAAGCCCGAACTGCGCGCCGAGCTGGCACGCAAGGCG
GGATCGACCACCGTGCCGCAGATCTGGATCGGCGAGACCCATGTCGGCGGCTGCGACGACCTTCATGCACTG
GAGCGCGCCGGCAAGCTGGACGCGCTGCTGTCTGCCTGA
Translation:
MPPVVIYTTAWCPYCIRAKQLLQRKGVDFQEIACDGKPELRAELARKAGSTTVPQIWIGETHVGGCDDLHAL
ERAGKLDALLSA*
AnnotationID:5266GeneID:5261
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 12:12:50
Gene Name:grx
Confidence Code:2
GeneProduct:glutaredoxin
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(18) Nucleotide biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0695,pfam00462
Secondary Functional Category(ies):posttranslational modification, protein turnover, chaperones
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70619.1|AE016704_10 (AE016793) glutaredoxin [Pseudomonas putida KT2440]
          Length = 84

 Score =  133 bits (335), Expect = 2e-31
 Identities = 59/84 (70%), Positives = 75/84 (89%)

>gb|AAO58751.1| (AE016875) glutaredoxin [Pseudomonas syringae pv. tomato str.
          DC3000]
          Length = 83

 Score =  130 bits (328), Expect = 1e-30
 Identities = 60/83 (72%), Positives = 71/83 (85%)

>gb|AAK38716.1|AF359453_2 (AF359453) glutaredoxin 3 [Pseudomonas fluorescens]
          Length = 84

 Score =  129 bits (325), Expect = 3e-30
 Identities = 61/84 (72%), Positives = 71/84 (84%)






 
Structural Features:
COG0695, GrxC, Glutaredoxin and related proteins 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 80 residues, 100.0% aligned
Score = 99.7 bits (248), Expect = 6e-23
Identities = 47/80 (58%), Positives = 52/80 (65%), Gaps = 2/80 (2%)

pfam00462, Glutaredoxin, Glutaredoxin. 
CD-Length = 84 residues, 100.0% aligned
Score = 87.6 bits (217), Expect = 2e-19
Identities = 42/84 (50%), Positives = 51/84 (60%), Gaps = 4/84 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:10522




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27668




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34952




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5261_cdd.html


    		




 
URL:

















    ReferenceID:35792




  
Author/Investigator(s):
        Hoog JO, von Bahr-Lindstrom H, Jornvall H, Holmgren A.





  
Title:
        Cloning and expression of the glutaredoxin (grx) gene of Escherichia coli.




  
PubMed:
        3530878


MedLine:
        




    
Source:
Gene. 1986;43(1-2):13-21.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=3530878









           
Homologs By Global Alignment 

           

       



     
Gene ID:5261
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7665
                           PA5129_tr
                           translation of PA5129
                           84
                           99.99
                           99.99
                           0
                           450.0
     

     
     
195301
                           gb|AAG08514.1|AE004926_4
                           (AE004926) glutaredoxin [Pseudomonas aeruginosa PAO1]
                           84
                           99.99
                           99.99
                           0
                           450.0
     

     
     
195304
                           gb|AAK38716.1|AF359453_2
                           (AF359453) glutaredoxin 3 [Pseudomonas fluorescens]
                           84
                           72.61
                           84.52
                           0
                           325.0
     

     
     
195303
                           gb|AAO58751.1|
                           (AE016875) glutaredoxin [Pseudomonas syringae pv. tomato str. DC3000]
                           84
                           71.42
                           84.52
                           1
                           328.0
     

     
     
195302
                           gb|AAN70619.1|AE016704_10
                           (AE016793) glutaredoxin [Pseudomonas putida KT2440]
                           84
                           70.23
                           89.28
                           0
                           335.0
     

     






      

          
GC ORFID: 48263How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5129Glimmer Score: 

          
Start: 5313236Stop: 5312982

          
Length: 255


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5129 translation of PA5129Homolog Bit Score 177.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6494 (ORF: BLASTX 130.0), t_PA5129 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCGCCCGTCGTGATCTACACCACCGCCTGGTGTCCGTACTGCATCCGCGCCAAGCAGTTGCTGCAACGC 
AAGGGCGTGGACTTCCAGGAGATCGCCTGCGACGGCAAGCCCGAACTGCGCGCCGAGCTGGCACGCAAGGCG 
GGATCGACCACCGTGCCGCAGATCTGGATCGGCGAGACCCATGTCGGCGGCTGCGACGACCTTCATGCACTG 
GAGCGCGCCGGCAAGCTGGACGCGCTGCTGTCTGCCTGA