ViewGene
Locus Name:
GeneID:
Location:

GeneID:526
TrivialName: PA14_31720
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_31720
PAO1 Ortholog Locus:PA2540
Sequence Length:1761
Protein Length:586
Start: 2758086
Stop: 2759846
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05928.1|AE004681_10 (AE004681) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 580/586 (98%), Positives = 582/586 (99%)
Sequence:
ATGCGCGACGTACAGGAATTGCGTTTCACCACCCACGACGGGGTAGAACTCTTCTACCGCCACTGGCCGGCC
AGCCGCCCGGCGCCGGACGGCACGCGCCAGGCGGTGTTGCTGTTCCACCGCGGCCATGAGCACTCCGGGCGG
ATCGCCCACCTGGTCGACGAACTCGACCTGCCGGAACACGACTTCTTCGCCTGGGACGCCCGTGGCCACGGC
CTCTCGCCAGGCGCCCGCGGCGACAGCCCGAGCTTCGCCACCAGCGTGCGCGACGTACAGACCTTCGTCGAC
CATATCCAGGCCGTCCACGGTATCGCCGAAGAGCGGATGGCGGTGGTGGCGCAGAGCGTCGGCGCGGTGCTG
GTTGCCACCTGGGCCCACGACTACGCGCCGAAGGTGCGCGCACTGGTGCTGGCTTCGCCGGCGTTCCAGGTC
AAGCTCTACGTGCCGTTCGCCCGCAGCGGGCTGAAACTGATGCGCCTGTGGCGCGGCAATTTCTTCGTCAAC
AGCTATGTCAAGGCACGCTTCCTCAGTCACGACCCGCAGCGGATCGCCTCCTACGACAGCGACCCGCTGATC
GCCAAGGCGATCTCGGTGAACGTCCTGCTCGGCCTCTACGAAGCTGCCGAGCGGGTGGTAGCGGACGCACAG
GCGATCCAGATTCCCACCCAACTGCTGATTTCCGGGGCCGACTTCGTCGTCCATCGTGCGCCGCAGGAGCGC
TTCTTCGAGCGTCTCGGCAGCCTGCGCAAGGAAAAGCACATCCTGCCCGGCTTCTTCCACGACACCCTTGGC
GAGCGCGATCGTCACCTGGCCGTCGGCCGTGCCCGGCGCTTCCTCCTCGAGGCATTCGCCACGGTCCCCGAA
CGACCGAGCCTGCTCGATGCCGACCGCCTGGGTCATACCTGCGCCGAGGCCGAGGCGCTGGCCGCGCCGTTG
CCGAAGAACTCGCCGCGCGATCTCTACTGGCGCGCCACCCGTGCCGGCCTGCGCCTGGGCAGCCTGTGGTCG
GACGGGGTCAAGCTGGGCTTCGACACCGGTTTCGATTCCGGGAGCACCCTCGACTATGTCTACCGCAACCAG
CCCAGCGGCAGCGGCCCGCTGGGTCGCCTGATCGACCGCAACTACCTGGACTCCATCGGCTGGCGCGGCATC
CGCCAGCGCAAGCTGCACGCCGAGGAGCTGCTGCGCCTGGCCATGCAGCGGTTGCGCGAGGAGCAGCGCGAG
GTGCGCATCGTCGACATCGCCGCCGGCCACGGCCGCTACATCCTCGAAGCCCTGCAAGGCGTCGAGCCGCTG
CCGGAAAGCATCCTTCTGCGCGACTACAGCGAGATCAACGTGCGTGACGGCAGCGCCCTGATCGAAAGCAAG
GGCCTCGCCGGCATCGCCCGCTTTGTCAAGGGCGACGCCTTCGATCGCGCCGACCTGGCGGCGCTGCAACCG
AAGCCGAGCCTCGGGGTGGTTTCCGGGCTCTACGAGCTGTTCGCCGACAACCGCATGGTCGGCGACTCCCTC
GCCGGCCTCGGCGAGGCGCTGGAGGAGGGCGCCTACCTGGTCTACACCGGACAGCCCTGGCACCCGCAGCTG
GAACTGATCGCCCGCGCGCTGACCAGCCACCGCCAGGGCCAGGCCTGGGTGATGCGGCGCCGGACCCAGGCG
GAAATGGACCAGCTGGTGGCCGCCGCCGGCTTCCGCAAGATCACCCAGCGGGTCGACCAGTGGGGCATCTTC
AGCGTATCGCTGGCGCAGAAGGTCGCCCGCTGA
Translation:
MRDVQELRFTTHDGVELFYRHWPASRPAPDGTRQAVLLFHRGHEHSGRIAHLVDELDLPEHDFFAWDARGHG
LSPGARGDSPSFATSVRDVQTFVDHIQAVHGIAEERMAVVAQSVGAVLVATWAHDYAPKVRALVLASPAFQV
KLYVPFARSGLKLMRLWRGNFFVNSYVKARFLSHDPQRIASYDSDPLIAKAISVNVLLGLYEAAERVVADAQ
AIQIPTQLLISGADFVVHRAPQERFFERLGSLRKEKHILPGFFHDTLGERDRHLAVGRARRFLLEAFATVPE
RPSLLDADRLGHTCAEAEALAAPLPKNSPRDLYWRATRAGLRLGSLWSDGVKLGFDTGFDSGSTLDYVYRNQ
PSGSGPLGRLIDRNYLDSIGWRGIRQRKLHAEELLRLAMQRLREEQREVRIVDIAAGHGRYILEALQGVEPL
PESILLRDYSEINVRDGSALIESKGLAGIARFVKGDAFDRADLAALQPKPSLGVVSGLYELFADNRMVGDSL
AGLGEALEEGAYLVYTGQPWHPQLELIARALTSHRQGQAWVMRRRTQAEMDQLVAAAGFRKITQRVDQWGIF
SVSLAQKVAR*
AnnotationID:535GeneID:526
AnnotatorUID: diggins
Modification Date/Time: 2005-03-06 21:09:14
Gene Name:
Confidence Code:3
GeneProduct:putative lysophospholipas
Cell Localization:()
Synonyms:PA2540
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2267
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG2267, PldB, Lysophospholipase [Lipid metabolism]
CD-Length = 298 residues,  98.0% aligned
Score =  196 bits (499), Expect = 7e-51
Identities = 109/298 (36%), Positives = 143/298 (47%), Gaps = 19/298 (6%)








   
Genomic Context:






   
Comment:


















    ReferenceID:1055




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18197




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33092




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:526_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:526
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
923
                           PA2540_tr
                           translation of PA2540
                           586
                           98.97
                           99.31
                           0
                           2998.0
     

     
     
37042
                           gb|AAG05928.1|AE004681_10
                           (AE004681) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           586
                           98.97
                           99.31
                           0
                           2998.0
     

     
     
37043
                           gb|AAO58956.1|
                           (AE016876) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           586
                           82.76
                           89.76
                           1
                           2537.0
     

     
     
37044
                           gb|AAM39816.1|
                           (AE012147) conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           587
                           63.03
                           75.63
                           1
                           1917.0
     

     
     
37045
                           gb|AAM35404.1|
                           (AE011678) conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306]
                           586
                           62.96
                           75.93
                           0
                           1908.0
     

     






      

          
GC ORFID: 43528How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2540Glimmer Score: 

          
Start: 2195840Stop: 2194080

          
Length: 1761


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2540 translation of PA2540Homolog Bit Score 1159.0

          
Other Homologs:  t_PA2540 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCGACGTACAGGAATTGCGTTTCACCACCCACGACGGGGTAGAACTCTTCTACCGCCACTGGCCGGCC 
AGCCGCCCGGCGCCGGACGGCACGCGCCAGGCGGTGTTGCTGTTCCACCGCGGCCATGAGCACTCCGGGCGG 
ATCGCCCACCTGGTCGACGAACTCGACCTGCCGGAACACGACTTCTTCGCCTGGGACGCCCGTGGCCACGGC 
CTCTCGCCAGGCGCCCGCGGCGACAGCCCGAGCTTCGCCACCAGCGTGCGCGACGTACAGACCTTCGTCGAC 
CATATCCAGGCCGTCCACGGTATCGCCGAAGAGCGGATGGCGGTGGTGGCGCAGAGCGTCGGCGCGGTGCTG 
GTTGCCACCTGGGCCCACGACTACGCGCCGAAGGTGCGCGCACTGGTGCTGGCTTCGCCGGCGTTCCAGGTC 
AAGCTCTACGTGCCGTTCGCCCGCAGCGGGCTGAAACTGATGCGCCTGTGGCGCGGCAATTTCTTCGTCAAC 
AGCTATGTCAAGGCACGCTTCCTCAGTCACGACCCGCAGCGGATCGCCTCCTACGACAGCGACCCGCTGATC 
GCCAAGGCGATCTCGGTGAACGTCCTGCTCGGCCTCTACGAAGCTGCCGAGCGGGTGGTAGCGGACGCACAG 
GCGATCCAGATTCCCACCCAACTGCTGATTTCCGGGGCCGACTTCGTCGTCCATCGTGCGCCGCAGGAGCGC 
TTCTTCGAGCGTCTCGGCAGCCTGCGCAAGGAAAAGCACATCCTGCCCGGCTTCTTCCACGACACCCTTGGC 
GAGCGCGATCGTCACCTGGCCGTCGGCCGTGCCCGGCGCTTCCTCCTCGAGGCATTCGCCACGGTCCCCGAA 
CGACCGAGCCTGCTCGATGCCGACCGCCTGGGTCATACCTGCGCCGAGGCCGAGGCGCTGGCCGCGCCGTTG 
CCGAAGAACTCGCCGCGCGATCTCTACTGGCGCGCCACCCGTGCCGGCCTGCGCCTGGGCAGCCTGTGGTCG 
GACGGGGTCAAGCTGGGCTTCGACACCGGTTTCGATTCCGGGAGCACCCTCGACTATGTCTACCGCAACCAG 
CCCAGCGGCAGCGGCCCGCTGGGTCGCCTGATCGACCGCAACTACCTGGACTCCATCGGCTGGCGCGGCATC 
CGCCAGCGCAAGCTGCACGCCGAGGAGCTGCTGCGCCTGGCCATGCAGCGGTTGCGCGAGGAGCAGCGCGAG 
GTGCGCATCGTCGACATCGCCGCCGGCCACGGCCGCTACATCCTCGAAGCCCTGCAAGGCGTCGAGCCGCTG 
CCGGAAAGCATCCTTCTGCGCGACTACAGCGAGATCAACGTGCGTGACGGCAGCGCCCTGATCGAAAGCAAG 
GGCCTCGCCGGCATCGCCCGCTTTGTCAAGGGCGACGCCTTCGATCGCGCCGACCTGGCGGCGCTGCAACCG 
AAGCCGAGCCTCGGGGTGGTTTCCGGGCTCTACGAGCTGTTCGCCGACAACCGCATGGTCGGCGACTCCCTC 
GCCGGCCTCGGCGAGGCGCTGGAGGAGGGCGCCTACCTGGTCTACACCGGACAGCCCTGGCACCCGCAGCTG 
GAACTGATCGCCCGCGCGCTGACCAGCCACCGCCAGGGCCAGGCCTGGGTGATGCGGCGCCGGACCCAGGCG 
GAAATGGACCAGCTGGTGGCCGCCGCCGGCTTCCGCAAGATCACCCAGCGGGTCGACCAGTGGGGCATCTTC 
AGCGTATCGCTGGCGCAGAAGGTCGCCCGCTGA