ViewGene
Locus Name:
GeneID:
Location:

GeneID:5259
TrivialName: PA14_48330
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_48330
PAO1 Ortholog Locus:PA1233
Sequence Length:258
Protein Length:85
Start: 4299925
Stop: 4299668
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04622.1|AE004552_12 (AE004552) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 85/85 (100%), Positives = 85/85 (100%)
Sequence:
ATGAAAACCTCGTTCTTGCTGGCCTTGCTGCTGTCCTGCTGGTCCCAGGTCCAGGCGGCGGACGACGACGGG
AAAGAGTTGCCGCCGATCGAGCGCTACGACTACGGCATGCCGCTGGACATCGAGCGGGTGCTTTCCGTCACG
CCGGTGCCGGCCACCTGTGGCGTGGTGCCGCTGGTGATGCTCTACCGCGACAGCGCCGGACGCCTACATCGC
TTGCAGTACCGAGGCCTTGGCGCGGGCTGTTCGCGGCACTGA
Translation:
MKTSFLLALLLSCWSQVQAADDDGKELPPIERYDYGMPLDIERVLSVTPVPATCGVVPLVMLYRDSAGRLHR
LQYRGLGAGCSRH*
AnnotationID:5264GeneID:5259
AnnotatorUID: diggins
Modification Date/Time: 2005-02-22 08:08:39
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1233
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:10518




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27664




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5259
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7663
                           PA1233_tr
                           translation of PA1233
                           85
                           99.99
                           99.99
                           0
                           449.0
     

     
     
195299
                           gb|AAG04622.1|AE004552_12
                           (AE004552) hypothetical protein PA1233 [Pseudomonas aeruginosa PAO1]
                           85
                           99.99
                           99.99
                           0
                           449.0
     

     






      

          
GC ORFID: 48261How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1233Glimmer Score: 

          
Start: 653983Stop: 654240

          
Length: 258


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1233 translation of PA1233Homolog Bit Score 177.0

          
Other Homologs:  

          
GC ORF Sequence

           
ATGAAAACCTCGTTCTTGCTGGCCTTGCTGCTGTCCTGCTGGTCCCAGGTCCAGGCGGCGGACGACGACGGG 
AAAGAGTTGCCGCCGATCGAGCGCTACGACTACGGCATGCCGCTGGACATCGAGCGGGTGCTTTCCGTCACG 
CCGGTGCCGGCCACCTGTGGCGTGGTGCCGCTGGTGATGCTCTACCGCGACAGCGCCGGACGCCTACATCGC 
TTGCAGTACCGAGGCCTTGGCGCGGGCTGTTCGCGGCACTGA