ViewGene
Locus Name:
GeneID:
Location:

GeneID:5258
TrivialName: PA14_52090
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52090
PAO1 Ortholog Locus:PA0940
Sequence Length:255
Protein Length:84
Start: 4621146
Stop: 4621400
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04329.1|AE004528_7 (AE004528) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 84/84 (100%), Positives = 84/84 (100%)
Sequence:
ATGGAGGTGAAGATCTTCGACACCCATGTGCGAACCCGCGACGGCCGCTACCTGCACTTCGATGTCCTGGTC
ACGGAGGAGCTGGGGGCTCGCGCCGGCGAGTTCGCTCGACGCTGGCTCGCCGGAAGAGGCATAGACGAGGCC
GATATCAGCCAGGGGCATTGCAGCTACTGCCATAGCGAGATTGCGACAGCAGAGGTTGCCGAAGCCATTCGG
CTCCATGGCCATTACATCCTTCCCCTGGAAGGCTGTTGA
Translation:
MEVKIFDTHVRTRDGRYLHFDVLVTEELGARAGEFARRWLAGRGIDEADISQGHCSYCHSEIATAEVAEAIR
LHGHYILPLEGC*
AnnotationID:5263GeneID:5258
AnnotatorUID: danlee
Modification Date/Time: 2004-05-11 13:01:19
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0940
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10516




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27662




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5258
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7662
                           PA0940_tr
                           translation of PA0940
                           84
                           99.99
                           99.99
                           0
                           450.0
     

     
     
195298
                           gb|AAG04329.1|AE004528_7
                           (AE004528) hypothetical protein PA0940 [Pseudomonas aeruginosa PAO1]
                           84
                           99.99
                           99.99
                           0
                           450.0
     

     






      

          
GC ORFID: 48260How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0940Glimmer Score: 

          
Start: 332761Stop: 332507

          
Length: 255


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0940 translation of PA0940Homolog Bit Score 177.0

          
Other Homologs:  t_PA0940 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAGGTGAAGATCTTCGACACCCATGTGCGAACCCGCGACGGCCGCTACCTGCACTTCGATGTCCTGGTC 
ACGGAGGAGCTGGGGGCTCGCGCCGGCGAGTTCGCTCGACGCTGGCTCGCCGGAAGAGGCATAGACGAGGCC 
GATATCAGCCAGGGGCATTGCAGCTACTGCCATAGCGAGATTGCGACAGCAGAGGTTGCCGAAGCCATTCGG 
CTCCATGGCCATTACATCCTTCCCCTGGAAGGCTGTTGA