ViewGene
Locus Name:
GeneID:
Location:

GeneID:5257
TrivialName: PA14_66890
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_66890
PAO1 Ortholog Locus:PA5062
Sequence Length:276
Protein Length:91
Start: 5973917
Stop: 5973642
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08447.1|AE004919_8 (AE004919) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 91/91 (100%), Positives = 91/91 (100%)
Sequence:
ATGTCGCGTATCCACATCGAACGTCCGCACAGCCTGGGGCTGGACGCCGCACGGGCCAAGGCGGAGAAACTG
GCCGAACGTCTGGCGAAGGAGCACGGCGTGCAGTGCGAATGGCAGGGCGACGAGCTGACCTTCAAGCGCAGC
GGCGTCGACGGCAGGATCGCGGTGGGGGCGGACAAGGTCGCGGTGGACGTCAAGCTCGGCCTGATGCTGTCG
GCCATGAGCGGCCTGCTCAAGGGCGAGATCGAGAAGGCGCTGGACAAGGCGCTGGCCTGA
Translation:
MSRIHIERPHSLGLDAARAKAEKLAERLAKEHGVQCEWQGDELTFKRSGVDGRIAVGADKVAVDVKLGLMLS
AMSGLLKGEIEKALDKALA*
AnnotationID:5262GeneID:5257
AnnotatorUID: diggins
Modification Date/Time: 2005-03-14 19:07:28
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5062
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:10514




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27660




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5257
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7661
                           PA5062_tr
                           translation of PA5062
                           91
                           99.99
                           99.99
                           0
                           452.0
     

     
     
195294
                           gb|AAG08447.1|AE004919_8
                           (AE004919) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           91
                           99.99
                           99.99
                           0
                           452.0
     

     
     
195296
                           emb|CAA09107.1|
                           (AJ010393) hypothetical protein [Pseudomonas oleovorans]
                           91
                           53.84
                           75.82
                           0
                           260.0
     

     
     
195297
                           gb|AAD02213.1|
                           (AF042276) unknown [Pseudomonas putida]
                           91
                           53.84
                           75.82
                           0
                           260.0
     

     
     
195295
                           gb|AAN70576.1|AE016700_4
                           (AE016792) conserved hypothetical protein [Pseudomonas putida KT2440]
                           111
                           45.04
                           63.06
                           20
                           268.0
     

     






      

          
GC ORFID: 48259How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5062Glimmer Score: 

          
Start: 5237601Stop: 5237326

          
Length: 276


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5062 translation of PA5062Homolog Bit Score 178.0

          
Other Homologs:  t_PA5062 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCGCGTATCCACATCGAACGTCCGCACAGCCTGGGGCTGGACGCCGCACGGGCCAAGGCGGAGAAACTG 
GCCGAACGTCTGGCGAAGGAGCACGGCGTGCAGTGCGAATGGCAGGGCGACGAGCTGACCTTCAAGCGCAGC 
GGCGTCGACGGCAGGATCGCGGTGGGGGCGGACAAGGTCGCGGTGGACGTCAAGCTCGGCCTGATGCTGTCG 
GCCATGAGCGGCCTGCTCAAGGGCGAGATCGAGAAGGCGCTGGACAAGGCGCTGGCCTGA