ViewGene
Locus Name:
GeneID:
Location:

GeneID:5256
TrivialName: PA14_12900
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12900
PAO1 Ortholog Locus:PA3940
Sequence Length:282
Protein Length:93
Start: 1106702
Stop: 1106421
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAK52477.1|AF345630_1 (AF345630) histone-like protein HU form N [Pseudomonas aeruginosa]
Identities = 93/93 (100%), Positives = 93/93 (100%)
Sequence:
ATGGCACTGACCAAAGACCAACTGATCCAGGACATCGCCGAAGCCATCGACGCGCAGAAGACCACCGTTCGC
AGCGCACTCGACCAGCTCGCCGAGATCGTCAAGGACGCCCTGGAGAACGATGGCGAAATCACCCTGCCGGGT
ATCGGCAAGCTGAAGGTCTCCGAGCGTCCCGCGCGCACCGGCCGCAACCCGCAGACCGGCAAGGCGATCGAG
ATCGCTGCCAAGCGTGTAGCCAAGTTCGTTCCGGCCAAGGCGCTGACCGACGCGATCAACGGCTGA
Translation:
MALTKDQLIQDIAEAIDAQKTTVRSALDQLAEIVKDALENDGEITLPGIGKLKVSERPARTGRNPQTGKAIE
IAAKRVAKFVPAKALTDAING*
AnnotationID:5261GeneID:5256
AnnotatorUID: danlee
Modification Date/Time: 2006-04-07 14:02:28
Gene Name:
Confidence Code:2
GeneProduct:histone-like protein HU form N
Cell Localization:()
Synonyms:PA3940
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(11) DNA replication, recombination, modification and repair
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00216,COG0776,smart00411
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
HupN
gb|AAK52476.1|AF345629_1 (AF345629) histone-like protein HU form N [Pseudomonas putida]
Length: 93
Identity: 77.41 
Similarity: 83.87
Gaps: 0
Score: 348.0






 
Structural Features:






   
Genomic Context:






   
Comment:
catalyze a beta-recombination reaction requiring nonspecific DNA bending


















    ReferenceID:10512




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27658




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32037




  
Author/Investigator(s):
        Bartels,F., Fernandez,S., Holtel,A., Timmis,K.N. and de Lorenzo,V.





  
Title:
        The essential HupB and HupN proteins of Pseudomonas putida provide
            redundant and nonspecific DNA-bending functions




  
PubMed:
        11278879


MedLine:
        21264404




    
Source:
J. Biol. Chem. 276 (20), 16641-16648 (2001)






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=AAK52476.1









           
Homologs By Global Alignment 

           

       



     
Gene ID:5256
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7660
                           PA3940_tr
                           translation of PA3940
                           93
                           99.99
                           99.99
                           0
                           451.0
     

     
     
195289
                           gb|AAK52477.1|AF345630_1
                           (AF345630) histone-like protein HU form N [Pseudomonas aeruginosa]
                           93
                           99.99
                           99.99
                           0
                           451.0
     

     
     
195290
                           gb|AAG07327.1|AE004812_2
                           (AE004812) probable DNA binding protein [Pseudomonas aeruginosa PAO1]
                           93
                           99.99
                           99.99
                           0
                           451.0
     

     
     
195291
                           gb|AAO54791.1|
                           (AE016860) DNA-binding protein HU family [Pseudomonas syringae pv. tomato str. DC3000]
                           93
                           79.56
                           86.02
                           0
                           357.0
     

     
     
195292
                           gb|AAK52476.1|AF345629_1
                           (AF345629) histone-like protein HU form N [Pseudomonas putida]
                           93
                           77.41
                           83.87
                           0
                           348.0
     

     






      

          
GC ORFID: 48258How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3940Glimmer Score: 

          
Start: 3847236Stop: 3847517

          
Length: 282


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3940 translation of PA3940Homolog Bit Score 178.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4397 (ORF: BLASTX 138.0), t_PA3940 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCACTGACCAAAGACCAACTGATCCAGGACATCGCCGAAGCCATCGACGCGCAGAAGACCACCGTTCGC 
AGCGCACTCGACCAGCTCGCCGAGATCGTCAAGGACGCCCTGGAGAACGATGGCGAAATCACCCTGCCGGGT 
ATCGGCAAGCTGAAGGTCTCCGAGCGTCCCGCGCGCACCGGCCGCAACCCGCAGACCGGCAAGGCGATCGAG 
ATCGCTGCCAAGCGTGTAGCCAAGTTCGTTCCGGCCAAGGCGCTGACCGACGCGATCAACGGCTGA