ViewGene
Locus Name:
GeneID:
Location:

GeneID:5253
TrivialName: PA14_53690
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53690
PAO1 Ortholog Locus:PA0818
Sequence Length:273
Protein Length:90
Start: 4761706
Stop: 4761978
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04207.1|AE004517_2 (AE004517) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 88/90 (97%), Positives = 89/90 (98%)
Sequence:
ATGCCCTACCGCGTTCTCCTGCTCATCCTGGCCCTGACGCCCGCCCTCGCCTCCTCCGCCACCCTGGACGAA
CGCCTGGGCGACCTTGAACACGCCTTCAAGCCCGACCTCGACGGGACGACAAGCGCAAAGCCGGCCAGCCCG
CCGCCGGAGCGGTTCAAGCTGGCGCCGCTGGGTAGCGTGGTGCGCAAGAAAGAGTGCGCGACGTCGAACCTG
TCGGATGAGCAGTCCAGCTGCGCGGCGCTGGAGTTCTGCACGGACTGCGCGCAGTAA
Translation:
MPYRVLLLILALTPALASSATLDERLGDLEHAFKPDLDGTTSAKPASPPPERFKLAPLGSVVRKKECATSNL
SDEQSSCAALEFCTDCAQ*
AnnotationID:5258GeneID:5253
AnnotatorUID: danlee
Modification Date/Time: 2004-04-20 17:05:27
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0818
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10506




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27651




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5253
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7657
                           PA0818_tr
                           translation of PA0818
                           90
                           97.77
                           98.88
                           0
                           451.0
     

     
     
195271
                           gb|AAG04207.1|AE004517_2
                           (AE004517) hypothetical protein PA0818 [Pseudomonas aeruginosa PAO1]
                           90
                           97.77
                           98.88
                           0
                           451.0
     

     






      

          
GC ORFID: 48255How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0818Glimmer Score: 

          
Start: 192201Stop: 191929

          
Length: 273


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA0818 translation of PA0818Homolog Bit Score 178.0

          
Other Homologs:  t_PA0818 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCTACCGCGTTCTCCTGCTCATCCTGGCCCTGACGCCCGCCCTCGCCTCCTCCGCCACCCTGGACGAA 
CGCCTGGGCGACCTTGAACACGCCTTCAAGCCCGACCTCGACGGGACGACAAGCGCAAAGCCGGCCAGCCCG 
CCGCCGGAGCGGTTCAAGCTGGCGCCGCTGGGTAGCGTGGTGCGCAAGAAAGAGTGCGCGACGTCGAACCTG 
TCGGATGAGCAGTCCAGCTGCGCGGCGCTGGAGTTCTGCACGGACTGCGCGCAGTAA