ViewGene
Locus Name:
GeneID:
Location:

GeneID:5252
TrivialName: PA14_59010
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_59010
PAO1 Ortholog Locus:
Sequence Length:258
Protein Length:85
Start: 5258160
Stop: 5258417
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84232.1| (AY273869) hypothetical protein RL107 [Pseudomonas aeruginosa]
Identities = 85/85 (100%), Positives = 85/85 (100%)
Sequence:
ATGAAGGCGTCCCAGACCTATCAGTGCATCGTCAAGTTCGATGGCGCCGGTTTCTGGACCAATACCATTCAG
AAGCAGCGTGCGACCTGCACCTGGAGCGACAAGGTGGCAGCCTCCCGCCTTGCCGAACGACTGTTTGGCGAG
GACAACGCATACATCACCCGTATGCCGGTACAGGCAGGCGACCACGAAAAGCGCATCGAGAGCCGCTGGGCG
CTGTCCTGTAGAAATCCCAAGGAGGTAGCGCGCGATGCCTGA
Translation:
MKASQTYQCIVKFDGAGFWTNTIQKQRATCTWSDKVAASRLAERLFGEDNAYITRMPVQAGDHEKRIESRWA
LSCRNPKEVARDA*
AnnotationID:5257GeneID:5252
AnnotatorUID: danlee
Modification Date/Time: 2005-08-26 15:03:23
Gene Name:RL107
Confidence Code:4
GeneProduct:Conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
CP12 (Pseudomonas aeruginosa strain C, plasmid pKLC102)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10504




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27649




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:38194




  
Author/Investigator(s):
        





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type: 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5252
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
195270
                           gb|AAP84232.1|
                           (AY273869) hypothetical protein RL107 [Pseudomonas aeruginosa]
                           85
                           99.99
                           99.99
                           0
                           454.0
     

     






      

          
GC ORFID: 48254How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RL107Glimmer Score: 

          
Start: 4521839Stop: 4522096

          
Length: 258


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_RL107 85 Homolog: No significant similarity () translation of RL107Homolog Bit Score 179.0

          
Other Homologs:  t_RL107 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAGGCGTCCCAGACCTATCAGTGCATCGTCAAGTTCGATGGCGCCGGTTTCTGGACCAATACCATTCAG 
AAGCAGCGTGCGACCTGCACCTGGAGCGACAAGGTGGCAGCCTCCCGCCTTGCCGAACGACTGTTTGGCGAG 
GACAACGCATACATCACCCGTATGCCGGTACAGGCAGGCGACCACGAAAAGCGCATCGAGAGCCGCTGGGCG 
CTGTCCTGTAGAAATCCCAAGGAGGTAGCGCGCGATGCCTGA