ViewGene
Locus Name:
GeneID:
Location:

GeneID:5250
TrivialName: PA14_64410
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_64410
PAO1 Ortholog Locus:PA4870
Sequence Length:267
Protein Length:88
Start: 5738947
Stop: 5738681
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08255.1|AE004900_9 (AE004900) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 86/88 (97%), Positives = 86/88 (97%)
Sequence:
ATGGCCAGCGGGTGGGCAAACGACGGTGCGGTGCAGGAACAGATCGACAGCACGATCGAGGATGCCATCGCT
CGTGCGCGCAGCCAGTTGCCCCGTGGCGAGAGCCTGACCCATTGCGAAGAGTGCGACGCGGCGATCCCCGAG
GCGCGGCGCCGGGCGATTCCCGGCGTGCGCCTGTGCGTCAACTGCCAGGCCGAGCACGACAGGGAACAGGCG
AAGTTCAGCGGCTACAACCGCCGCGGCAGCAAGGACAGCCAGTTGCGCTGA
Translation:
MASGWANDGAVQEQIDSTIEDAIARARSQLPRGESLTHCEECDAAIPEARRRAIPGVRLCVNCQAEHDREQA
KFSGYNRRGSKDSQLR*
AnnotationID:5255GeneID:5250
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 11:11:59
Gene Name:
Confidence Code:3
GeneProduct:putative Zinc-finger containing protein
Cell Localization:()
Synonyms:ybiI
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:putative putative DnaK suppressor protein
Functional Category Confidence Code:5
COGs:pfam01258
Secondary Functional Category(ies):signal transduction mechanism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN79361.1|AE016757_265 (AE016757) Hypothetical protein ybiI [Escherichia coli CFT073]
          Length = 88

 Score =  139 bits (349), Expect = 4e-33
 Identities = 65/88 (73%), Positives = 75/88 (85%)

>emb|CAD05272.1| (AL627268) hypothetical Zinc-finger containing protein
          [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 88

 Score =  134 bits (338), Expect = 8e-32
 Identities = 63/88 (71%), Positives = 71/88 (80%)

>gb|AAL19761.1| (AE008734) putative DnaK suppressor protein [Salmonella
          typhimurium LT2]
          Length = 88

 Score =  133 bits (335), Expect = 2e-31
 Identities = 63/88 (71%), Positives = 70/88 (79%)






 
Structural Features:
pfam01258, zf-dskA_traR, Prokaryotic dksA/traR C4-type zinc finger.
CD-Length = 70 residues, 100.0% aligned
Score = 64.7 bits (157), Expect = 2e-12
Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 1/71 (1%)








   
Genomic Context:






   
Comment:


















    ReferenceID:10500




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27645




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35182




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5250_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5250
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7655
                           PA4870_tr
                           translation of PA4870
                           88
                           97.72
                           97.72
                           0
                           453.0
     

     
     
195256
                           gb|AAG08255.1|AE004900_9
                           (AE004900) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           88
                           97.72
                           97.72
                           0
                           453.0
     

     
     
195257
                           gb|AAM36226.1|
                           (AE011767) conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306]
                           88
                           77.27
                           86.36
                           0
                           366.0
     

     
     
195258
                           gb|AAC73890.1|
                           (AE000182) orf, hypothetical protein [Escherichia coli K12]
                           88
                           73.86
                           85.22
                           0
                           350.0
     

     
     
195259
                           dbj|BAA35469.1|
                           (D90717) Hypothetical 9.8 kd protein in ding/rarB 3'region. [Escherichia coli K12]
                           88
                           73.86
                           85.22
                           0
                           350.0
     

     






      

          
GC ORFID: 48252How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4870Glimmer Score: 

          
Start: 5002628Stop: 5002362

          
Length: 267


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4870 translation of PA4870Homolog Bit Score 179.0

          
Other Homologs:  t_PA4870 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCAGCGGGTGGGCAAACGACGGTGCGGTGCAGGAACAGATCGACAGCACGATCGAGGATGCCATCGCT 
CGTGCGCGCAGCCAGTTGCCCCGTGGCGAGAGCCTGACCCATTGCGAAGAGTGCGACGCGGCGATCCCCGAG 
GCGCGGCGCCGGGCGATTCCCGGCGTGCGCCTGTGCGTCAACTGCCAGGCCGAGCACGACAGGGAACAGGCG 
AAGTTCAGCGGCTACAACCGCCGCGGCAGCAAGGACAGCCAGTTGCGCTGA