ViewGene
Locus Name:
GeneID:
Location:

GeneID:525
TrivialName: PA14_11600
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_11600
PAO1 Ortholog Locus:PA4039
Sequence Length:1803
Protein Length:600
Start: 1005307
Stop: 1003505
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07426.1|AE004820_11 (AE004820) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 589/600 (98%), Positives = 593/600 (98%)
Sequence:
ATGAAACGAACCCTGTACTCGGGCGTCGGCCTGCTGCTGGTCGGCCTGCTGTTCCTCGCTTTCAACCTGCTG
TCCAGCCTGCTGCTGCGCGACCAGCAGTTCGACCTCACCCAGCAGAAGCTCTACACCTTCAGCGCCGGCACC
CAGGAAGTCCTCGACAGTCTCGACGAACCGCTCAACCTCTACCTGTTCTTTTCGAAAAGCCGCGCCAGTGAC
CTACCCGCCCTGCGCAACTACGCCCGCCGCGTCGAGGAAGTGCTGGACCTCTATGCACGGCGGAGCCATGGC
AATGTCCGATTGTTCGTGATCGATCCCCTGCCATTCTCCGACGACGAGGACCGTGCCGCGCGCTTCGGCCTG
CAGGCGCCGCCCATCGGCCCGAATGGCGAAGCCATCTACTTTGGCCTGGCGGCCACCAACCCGACCGACGGC
CTCCAGGTGATCCCGTTCTTCTCGCCGGAAGAAGAGCCGCTTCTGGAATACGATCTCAGCCGCCTGGTCCAG
GCGCTCGCGCAACGGGAGCGCACGGTAGTCGGCCTGATGAGTTCGCTGCCGATGACCGGGCAGGCGCCCACC
GACGGGCAGTCGGGCAGCAGGCCGTGGGCGATGATGGACAAGCTCTACCAACAGTTCGACATCCGCACCCTG
GGGCTCGCCTCGACGGAAATCCCCGCCGACATCTCGGTGTTGATGCTGGTGCACCCCAGGCAATTGTCCGAA
CAGACCCAATACGCCATCGACCAGTTCGTCCTGCGCGGCGGCAAGCTGCTGGCCTTCGTCGATCCTCTGAGT
CTCGCCGATGCGGACGGCGGGAAAGGCTCCGACCTGGCCCCGTTGCTGCGTTCCTGGGGCGTCCAGTTGCGG
CCGGATACCCTGCTGGCGGATGCCTCGTTCGCCATGATCAAACCCAACGCCGAACGTCGCCCGGAGCGCAAT
CCGACCTGGCTACATCTCCCCGGCGACACGTTCCCCCACGACAACGTGCTGACCACCGGCCTGGAAAGCCTC
AACCTCGCCAGCGTCGGCCTGCTCGAACCTCTCGGCGGAGCCTCGACGCGCTTCATTCCGTTGCTGCACAGC
TCGGCGCACAGCATGCCGCTGTCGCTGGAGCGCTTCCGCCAATCCTCGACGGAGCAGCTCAACGCCACCCTG
GTCCCGACCGGAGAACGCTACGTGCTGGCCGCCAAGGTCGAGGGGCCGGCGACGAGTGCCTTCCCCGCGGAC
CGCGGGAAGCAAGGCGAAGGCCTGAGCGACAGCGCGAACATCCATGTGCTGTTGGTCGCCGATACGGACCTG
CTGAGCAATCCGCTCTGGCTCCAGGAACAGCCCGGCCACAACGAGCCGCAGGTATGGGCGGACAACGACCTG
TTCGTCGGCAATGCCCTCGACTATCTCTCCGGTTCGGACGCGCTGATCGACCTACCCTCGCGAGGCCATACG
AAGCGCCCGTTCACCCGCGTGGAAGCGCTCCGACGCGAAGCCGGGATGCGCGCCCAGGAACAGCTCAACGCG
CTGCAGCAGAGCCTCAACGATACCGACAAGAACCTGCGGGCCCTGCAGCAATCGATGGACGACGGCGACCAG
GAGGTGACTCCGGAAATGGAAGCGACGCTGCGCCGCTTCATTGATGACAAATTGCGCATCCGCCAGCAACTG
CGTCAATTGCAGTTCCAACTGAATGCCGATGTCGAGCGCCTGGCGGAACAGGTGAAACTGGCCAATACGGTC
CTGCTGCCGGCGCTCCTCACCCTGCTCCTCCTGCTGCATTGGAGCTGGCGCAGCATGCGCCGGAGGAGGGGC
TGA
Translation:
MKRTLYSGVGLLLVGLLFLAFNLLSSLLLRDQQFDLTQQKLYTFSAGTQEVLDSLDEPLNLYLFFSKSRASD
LPALRNYARRVEEVLDLYARRSHGNVRLFVIDPLPFSDDEDRAARFGLQAPPIGPNGEAIYFGLAATNPTDG
LQVIPFFSPEEEPLLEYDLSRLVQALAQRERTVVGLMSSLPMTGQAPTDGQSGSRPWAMMDKLYQQFDIRTL
GLASTEIPADISVLMLVHPRQLSEQTQYAIDQFVLRGGKLLAFVDPLSLADADGGKGSDLAPLLRSWGVQLR
PDTLLADASFAMIKPNAERRPERNPTWLHLPGDTFPHDNVLTTGLESLNLASVGLLEPLGGASTRFIPLLHS
SAHSMPLSLERFRQSSTEQLNATLVPTGERYVLAAKVEGPATSAFPADRGKQGEGLSDSANIHVLLVADTDL
LSNPLWLQEQPGHNEPQVWADNDLFVGNALDYLSGSDALIDLPSRGHTKRPFTRVEALRREAGMRAQEQLNA
LQQSLNDTDKNLRALQQSMDDGDQEVTPEMEATLRRFIDDKLRIRQQLRQLQFQLNADVERLAEQVKLANTV
LLPALLTLLLLLHWSWRSMRRRRG*
AnnotationID:534GeneID:525
AnnotatorUID: urbach
Modification Date/Time: 2004-10-05 16:04:04
Gene Name:
Confidence Code:3
GeneProduct:possible ABC transporter component
Cell Localization:()
Synonyms:PA4039
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3225
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
gnl|CDD|12563 COG3225, GldG, ABC-type uncharacterized transport system involved in
gliding motility, auxiliary component
[Cell motility and secretion]
Length = 538
Score =  542 bits (1397), Expect = e-154
Identities = 256/609 (42%), Positives = 303/609 (49%), Gaps = 84/609 (13%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1053




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18195




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:525
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
921
                           PA4039_tr
                           translation of PA4039
                           600
                           98.16
                           98.83
                           0
                           3002.0
     

     
     
37040
                           gb|AAG07426.1|AE004820_11
                           (AE004820) hypothetical protein PA4039 [Pseudomonas aeruginosa PAO1]
                           600
                           98.16
                           98.83
                           0
                           3002.0
     

     
     
922
                           PA3670_tr
                           translation of PA3670
                           619
                           52.82
                           68.82
                           23
                           1579.0
     

     
     
37041
                           gb|AAG07058.1|AE004786_10
                           (AE004786) hypothetical protein PA3670 [Pseudomonas aeruginosa PAO1]
                           619
                           52.82
                           68.82
                           23
                           1579.0
     

     






      

          
GC ORFID: 43527How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4039Glimmer Score: 

          
Start: 3948630Stop: 3950432

          
Length: 1803


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4039 translation of PA4039Homolog Bit Score 1160.0

          
Other Homologs:  t_PA4039 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAACGAACCCTGTACTCGGGCGTCGGCCTGCTGCTGGTCGGCCTGCTGTTCCTCGCTTTCAACCTGCTG 
TCCAGCCTGCTGCTGCGCGACCAGCAGTTCGACCTCACCCAGCAGAAGCTCTACACCTTCAGCGCCGGCACC 
CAGGAAGTCCTCGACAGTCTCGACGAACCGCTCAACCTCTACCTGTTCTTTTCGAAAAGCCGCGCCAGTGAC 
CTACCCGCCCTGCGCAACTACGCCCGCCGCGTCGAGGAAGTGCTGGACCTCTATGCACGGCGGAGCCATGGC 
AATGTCCGATTGTTCGTGATCGATCCCCTGCCATTCTCCGACGACGAGGACCGTGCCGCGCGCTTCGGCCTG 
CAGGCGCCGCCCATCGGCCCGAATGGCGAAGCCATCTACTTTGGCCTGGCGGCCACCAACCCGACCGACGGC 
CTCCAGGTGATCCCGTTCTTCTCGCCGGAAGAAGAGCCGCTTCTGGAATACGATCTCAGCCGCCTGGTCCAG 
GCGCTCGCGCAACGGGAGCGCACGGTAGTCGGCCTGATGAGTTCGCTGCCGATGACCGGGCAGGCGCCCACC 
GACGGGCAGTCGGGCAGCAGGCCGTGGGCGATGATGGACAAGCTCTACCAACAGTTCGACATCCGCACCCTG 
GGGCTCGCCTCGACGGAAATCCCCGCCGACATCTCGGTGTTGATGCTGGTGCACCCCAGGCAATTGTCCGAA 
CAGACCCAATACGCCATCGACCAGTTCGTCCTGCGCGGCGGCAAGCTGCTGGCCTTCGTCGATCCTCTGAGT 
CTCGCCGATGCGGACGGCGGGAAAGGCTCCGACCTGGCCCCGTTGCTGCGTTCCTGGGGCGTCCAGTTGCGG 
CCGGATACCCTGCTGGCGGATGCCTCGTTCGCCATGATCAAACCCAACGCCGAACGTCGCCCGGAGCGCAAT 
CCGACCTGGCTACATCTCCCCGGCGACACGTTCCCCCACGACAACGTGCTGACCACCGGCCTGGAAAGCCTC 
AACCTCGCCAGCGTCGGCCTGCTCGAACCTCTCGGCGGAGCCTCGACGCGCTTCATTCCGTTGCTGCACAGC 
TCGGCGCACAGCATGCCGCTGTCGCTGGAGCGCTTCCGCCAATCCTCGACGGAGCAGCTCAACGCCACCCTG 
GTCCCGACCGGAGAACGCTACGTGCTGGCCGCCAAGGTCGAGGGGCCGGCGACGAGTGCCTTCCCCGCGGAC 
CGCGGGAAGCAAGGCGAAGGCCTGAGCGACAGCGCGAACATCCATGTGCTGTTGGTCGCCGATACGGACCTG 
CTGAGCAATCCGCTCTGGCTCCAGGAACAGCCCGGCCACAACGAGCCGCAGGTATGGGCGGACAACGACCTG 
TTCGTCGGCAATGCCCTCGACTATCTCTCCGGTTCGGACGCGCTGATCGACCTACCCTCGCGAGGCCATACG 
AAGCGCCCGTTCACCCGCGTGGAAGCGCTCCGACGCGAAGCCGGGATGCGCGCCCAGGAACAGCTCAACGCG 
CTGCAGCAGAGCCTCAACGATACCGACAAGAACCTGCGGGCCCTGCAGCAATCGATGGACGACGGCGACCAG 
GAGGTGACTCCGGAAATGGAAGCGACGCTGCGCCGCTTCATTGATGACAAATTGCGCATCCGCCAGCAACTG 
CGTCAATTGCAGTTCCAACTGAATGCCGATGTCGAGCGCCTGGCGGAACAGGTGAAACTGGCCAATACGGTC 
CTGCTGCCGGCGCTCCTCACCCTGCTCCTCCTGCTGCATTGGAGCTGGCGCAGCATGCGCCGGAGGAGGGGC 
TGA