ViewGene
Locus Name:
GeneID:
Location:

GeneID:5249
TrivialName: PA14_61370
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_61370
PAO1 Ortholog Locus:PA4637
Sequence Length:279
Protein Length:92
Start: 5478444
Stop: 5478166
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08025.1|AE004878_3 (AE004878) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 89/91 (97%), Positives = 89/91 (97%)
Sequence:
ATGTCCTTGCAAGCCTTGTGGGCGCTGTTCCTCGCCCATCCCGCGCAGGCCGTGAACGGCCTTGCGCTGTTC
TTCGGTGTCGCCGGCGCCTGGCTGCTGCTGGCCACCCGCGCACGCGAGCGTCGCGCCCTGGCGCGCTGGGCC
GCGGAGGGCGAGGCGGGGGAGGAGGCATTGCCGATGGACGAGGCGACCCTGCGGATCAACCTGTTCTTCTAC
CGATTCGGCGCCGCCTGCCTGGGCCTGGCGCTGCTGGTCAGCTGGGCCAGCACGCGGTTCTGA
Translation:
MSLQALWALFLAHPAQAVNGLALFFGVAGAWLLLATRARERRALARWAAEGEAGEEALPMDEATLRINLFFY
RFGAACLGLALLVSWASTRF*
AnnotationID:5254GeneID:5249
AnnotatorUID: diggins
Modification Date/Time: 2005-05-06 14:02:42
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4637
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:10498




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27643




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5249
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7654
                           PA4637_tr
                           translation of PA4637
                           92
                           96.73
                           96.73
                           0
                           453.0
     

     
     
195255
                           gb|AAG08025.1|AE004878_3
                           (AE004878) hypothetical protein PA4637 [Pseudomonas aeruginosa PAO1]
                           92
                           96.73
                           96.73
                           0
                           453.0
     

     






      

          
GC ORFID: 48251How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4637Glimmer Score: 

          
Start: 4742124Stop: 4741846

          
Length: 279


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4637 translation of PA4637Homolog Bit Score 179.0

          
Other Homologs:  t_PA4637 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCTTGCAAGCCTTGTGGGCGCTGTTCCTCGCCCATCCCGCGCAGGCCGTGAACGGCCTTGCGCTGTTC 
TTCGGTGTCGCCGGCGCCTGGCTGCTGCTGGCCACCCGCGCACGCGAGCGTCGCGCCCTGGCGCGCTGGGCC 
GCGGAGGGCGAGGCGGGGGAGGAGGCATTGCCGATGGACGAGGCGACCCTGCGGATCAACCTGTTCTTCTAC 
CGATTCGGCGCCGCCTGCCTGGGCCTGGCGCTGCTGGTCAGCTGGGCCAGCACGCGGTTCTGA