ViewGene
Locus Name:
GeneID:
Location:

GeneID:5248
TrivialName: PA14_34920
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_34920
PAO1 Ortholog Locus:PA2297
Sequence Length:246
Protein Length:81
Start: 3108177
Stop: 3108422
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05685.1|AE004655_7 (AE004655) probable ferredoxin [Pseudomonas aeruginosa PAO1]
Identities = 81/81 (100%), Positives = 81/81 (100%)
Sequence:
ATGGCCTACCGACCCCAGGACATCTTCTTCCGCAGCAGCGCCCCGGTGACCATCGACGAAGACCGTTGCATC
GCCGACAAGGGCTGCACCGTCTGCGTCGAGGTCTGCCCGATGGACCTGCTGGCCATCGATCCGACGACCCGC
AAGGCCTACATGGCCTACGACGAGTGCTGGTACTGCATGCCTTGCGAAAAGGACTGCCCGACCGGCGCGGTG
AAGGTGGAGATTCCCTACCTGCTGCGCTGA
Translation:
MAYRPQDIFFRSSAPVTIDEDRCIADKGCTVCVEVCPMDLLAIDPTTRKAYMAYDECWYCMPCEKDCPTGAV
KVEIPYLLR*
AnnotationID:5253GeneID:5248
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 12:12:26
Gene Name:
Confidence Code:3
GeneProduct:putative ferredoxin
Cell Localization:()
Synonyms:PA2297
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1146
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN65839.1|AE016212_5 (AE016774) ferredoxin, 4Fe-4S [Pseudomonas putida KT2440]
          Length = 81

 Score =  163 bits (412), Expect = 2e-40
 Identities = 71/81 (87%), Positives = 79/81 (97%)

>dbj|BAB54582.1| (AP003015) probable ferredoxin [Mesorhizobium loti]
          Length = 77

 Score =  123 bits (308), Expect = 3e-28
 Identities = 51/70 (72%), Positives = 59/70 (84%)








 
Structural Features:
COG1146, COG1146, Ferredoxin [Energy production and conversion]
CD-Length = 68 residues,  92.6% aligned
Score = 44.4 bits (104), Expect = 2e-06
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 5/66 (7%)






   
Genomic Context:






   
Comment:


















    ReferenceID:10496




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27641




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32493




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5248_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5248
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7653
                           PA2297_tr
                           translation of PA2297
                           81
                           99.99
                           99.99
                           0
                           455.0
     

     
     
195250
                           gb|AAG05685.1|AE004655_7
                           (AE004655) probable ferredoxin [Pseudomonas aeruginosa PAO1]
                           81
                           99.99
                           99.99
                           0
                           455.0
     

     
     
195251
                           gb|AAN65839.1|AE016212_5
                           (AE016774) ferredoxin, 4Fe-4S [Pseudomonas putida KT2440]
                           81
                           87.65
                           97.53
                           0
                           412.0
     

     
     
195252
                           dbj|BAC48462.1|
                           (AP005946) bsr3197 [Bradyrhizobium japonicum USDA 110]
                           83
                           63.85
                           75.90
                           8
                           307.0
     

     
     
195253
                           dbj|BAB54582.1|
                           (AP003015) probable ferredoxin [Mesorhizobium loti]
                           83
                           63.85
                           74.69
                           8
                           306.0
     

     






      

          
GC ORFID: 48250How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2297Glimmer Score: 

          
Start: 1845739Stop: 1845494

          
Length: 246


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2297 translation of PA2297Homolog Bit Score 179.0

          
Other Homologs:  t_PA2297 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCTACCGACCCCAGGACATCTTCTTCCGCAGCAGCGCCCCGGTGACCATCGACGAAGACCGTTGCATC 
GCCGACAAGGGCTGCACCGTCTGCGTCGAGGTCTGCCCGATGGACCTGCTGGCCATCGATCCGACGACCCGC 
AAGGCCTACATGGCCTACGACGAGTGCTGGTACTGCATGCCTTGCGAAAAGGACTGCCCGACCGGCGCGGTG 
AAGGTGGAGATTCCCTACCTGCTGCGCTGA