ViewGene

Locus Name:
GeneID:
Location:

GeneID:5245
TrivialName: PA14_02460
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_02460
PAO1 Ortholog Locus:
Sequence Length:309
Protein Length:102
Start: 222031
Stop: 222339
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAN62245.1|AF440524_32 (AF440524) putative proton-translocating NAD(P) transhydrogenase [Pseudomonas aeruginosa]
Identities = 96/99 (96%), Positives = 98/99 (98%)
Sequence:
ATGGATATCATTTCTGACGGGATCTACAACCTGATCATCTTCGTGCTGGCCGTGTACGTCGGCTACCACGTG
GTATGGAACGTCACCCCTGCCTTGCACACCCCGCTGATGGCGGTGACCAACGCGATTTCCGCGATCGTCATC
GTCGGTGCCATGCTCGCCGCCGCCCTGACCGTGACCCCGCTGGGCAAGGCCATGGGCACCCTCGCCGTGGCC
TTGGCCGCGGTCAATGTGTTCGGTGGCTTCCTGGTCACCCGGCGCATGCTGGAAATGTTCAAGAAGAAAGCG
CCGAAGGCGGGGGGCCACTGA
Translation:
MDIISDGIYNLIIFVLAVYVGYHVVWNVTPALHTPLMAVTNAISAIVIVGAMLAAALTVTPLGKAMGTLAVA
LAAVNVFGGFLVTRRMLEMFKKKAPKAGGH*
AnnotationID:5250GeneID:5245
AnnotatorUID: danlee
Modification Date/Time: 2006-03-16 16:04:06
Gene Name:
Confidence Code:3
GeneProduct:putative NAD(P) transhydrogenase, subunit alpha part 2
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:pntA C-terminus
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>emb|CAD16439.1| (AL646071) PROBABLE TRANSMEMBRANE NAD(P) TRANSHYDROGENASE (ALPHA
           SUBUNIT PART 2) PROTEIN [Ralstonia solanacearum]
          Length = 107

 Score =  163 bits (413), Expect = 2e-40
 Identities = 81/100 (81%), Positives = 91/100 (91%)

>emb|CAE32442.1| (BX640442) NAD(P) transhydrogenase, subunit alpha part 2
           [Bordetella bronchiseptica]
          Length = 105

 Score =  156 bits (394), Expect = 3e-38
 Identities = 81/100 (81%), Positives = 87/100 (87%)

>emb|CAE37793.1| (BX640430) NAD(P) transhydrogenase, subunit alpha part 2
           [Bordetella parapertussis]
          Length = 105

 Score =  156 bits (394), Expect = 3e-38
 Identities = 81/100 (81%), Positives = 87/100 (87%)
Structural Features:
Genomic Context:
Comment:
Matches 3' end of PA0195 (Identities = 102/102 (100%), Positives = 102/102 (100%) for last 
102 amino acids of PA0195).
ReferenceID:10490
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27635
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33563
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:5245_cdd.html
URL:
ReferenceID:35480
Author/Investigator(s): Williams R, Cotton NP, Thomas CM, Jackson JB.
Title: Cloning and sequencing of the genes for the proton-translocating nicotinamide nucleotide transhydrogenase from Rhodospirillum rubrum and the implications for the domain structure of the enzyme.
PubMed: 8075801
MedLine:
Source:
Microbiology. 1994 Jul;140 ( Pt 7):1595-604.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8075801
Homologs By Global Alignment
Gene ID:5245

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
195230 gb|AAN62245.1|AF440524_32 (AF440524) putative proton-translocating NAD(P) transhydrogenase [Pseudomonas aeruginosa] 105 92.38 94.28 3 477.0
195232 emb|CAE32442.1| (BX640442) NAD(P) transhydrogenase, subunit alpha part 2 [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50] 105 77.14 82.85 3 392.0
195233 emb|CAE37793.1| (BX640430) NAD(P) transhydrogenase, subunit alpha part 2 [Bordetella parapertussis] 105 77.14 82.85 3 394.0
195234 emb|CAD18101.1| (AL646081) PROBABLE TRANSMEMBRANE NAD(P) TRANSHYDROGENASE (ALPHA SUBUNIT PART 2) TRANSMEMBRANE PROTEIN [Ralstonia solanacearum] 108 75.92 81.48 6 384.0
195231 emb|CAD16439.1| (AL646071) PROBABLE TRANSMEMBRANE NAD(P) TRANSHYDROGENASE (ALPHA SUBUNIT PART 2) PROTEIN [Ralstonia solanacearum] 107 75.70 85.98 5 412.0
GC ORFID: 48247How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: psyr_15may02_Scaffold2_revised_gene2884Glimmer Score:
Start: 6023372Stop: 6023680
Length: 309
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: psyr_15may02_Scaffold2_revised_gene2884 related to: gi|15600765|ref|NP_248886.1| (NC_002516) NAD/NADP transhydrogenase, membrane-spanning dIIa subunit [Pseudomonas aeruginosa]Homolog Bit Score 181.0
Other Homologs: t_PA0195 (ORF: GLIMMER)
GC ORF Sequence
ATGGATATCATTTCTGACGGGATCTACAACCTGATCATCTTCGTGCTGGCCGTGTACGTCGGCTACCACGTG
GTATGGAACGTCACCCCTGCCTTGCACACCCCGCTGATGGCGGTGACCAACGCGATTTCCGCGATCGTCATC
GTCGGTGCCATGCTCGCCGCCGCCCTGACCGTGACCCCGCTGGGCAAGGCCATGGGCACCCTCGCCGTGGCC
TTGGCCGCGGTCAATGTGTTCGGTGGCTTCCTGGTCACCCGGCGCATGCTGGAAATGTTCAAGAAGAAAGCG
CCGAAGGCGGGGGGCCACTGA