ViewGene
Locus Name:
GeneID:
Location:

GeneID:5243
TrivialName: PA14_36890
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_36890
PAO1 Ortholog Locus:PA2140
Sequence Length:240
Protein Length:79
Start: 3287476
Stop: 3287237
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05528.1|AE004641_7 (AE004641) probable metallothionein [Pseudomonas aeruginosa PAO1]
Identities = 79/79 (100%), Positives = 79/79 (100%)
Sequence:
ATGAACAGCGAAACCTGTGCCTGTCCTAAATGCACCTGCCAGCCCGGCGCCGATGCCGTCGAACGCGACGGC
CAGCACTATTGCTGCGCGGCCTGCGCCAGCGGCCACCCCCAGGGCGAGCCGTGTCGCGACGCCGATTGCCCC
TGTGGCGGCACCACCCGGCCCCAGGTGGCGGAGGATCGCCAGCTGGACGATGCGTTGAAGGAGACCTTTCCC
GCCAGCGACCCGATCTCGCCCTGA
Translation:
MNSETCACPKCTCQPGADAVERDGQHYCCAACASGHPQGEPCRDADCPCGGTTRPQVAEDRQLDDALKETFP
ASDPISP*
AnnotationID:5248GeneID:5243
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 11:11:28
Gene Name:
Confidence Code:3
GeneProduct:putative metallothionein
Cell Localization:()
Synonyms:PA2140
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(8) Central intermediary metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68869.1|AE016519_2 (AE016786) metallothionein, putative [Pseudomonas putida KT2440]
          Length = 74

 Score = 98.6 bits (244), Expect = 7e-21
 Identities = 44/79 (55%), Positives = 55/79 (69%), Gaps = 5/79 (6%)






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:10486




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27631




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5243
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7649
                           PA2140_tr
                           translation of PA2140
                           79
                           99.99
                           99.99
                           0
                           458.0
     

     
     
195228
                           gb|AAG05528.1|AE004641_7
                           (AE004641) probable metallothionein [Pseudomonas aeruginosa PAO1]
                           79
                           99.99
                           99.99
                           0
                           458.0
     

     






      

          
GC ORFID: 48245How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2140Glimmer Score: 

          
Start: 1666438Stop: 1666677

          
Length: 240


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2140 translation of PA2140Homolog Bit Score 181.0

          
Other Homologs:  t_PA2140 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACAGCGAAACCTGTGCCTGTCCTAAATGCACCTGCCAGCCCGGCGCCGATGCCGTCGAACGCGACGGC 
CAGCACTATTGCTGCGCGGCCTGCGCCAGCGGCCACCCCCAGGGCGAGCCGTGTCGCGACGCCGATTGCCCC 
TGTGGCGGCACCACCCGGCCCCAGGTGGCGGAGGATCGCCAGCTGGACGATGCGTTGAAGGAGACCTTTCCC 
GCCAGCGACCCGATCTCGCCCTGA