ViewGene
Locus Name:
GeneID:
Location:

GeneID:5242
TrivialName: PA14_59950
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_59950
PAO1 Ortholog Locus:
Sequence Length:285
Protein Length:94
Start: 5339993
Stop: 5340277
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84148.1| (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa]
Identities = 93/94 (98%), Positives = 93/94 (98%)
Sequence:
ATGAGAGCTCTGAATTCGCTGACCCAGAACCTGATCGACAACCTGACCCAGATCCTGCAGAACCCCGAAGAG
GATGCCCTGCAGACGCTAAGGATATGCGCTCCTGTACTGATAGAGGAGCTGCAGCAGATTCAACTGAGGGCA
GTCGATCGCCGGGATATCGTCCCGCAGATAAAGCAGCTCTTGGATGAATGGCTGCAACAACATCCACAGCCT
GATACGGCCCAACAGGCGCTCATTGAGGCCGTGGACCGCGCGGAGATCCTACAGCGGAGGCAAGCGTGA
Translation:
MRALNSLTQNLIDNLTQILQNPEEDALQTLRICAPVLIEELQQIQLRAVDRRDIVPQIKQLLDEWLQQHPQP
DTAQQALIEAVDRAEILQRRQA*
AnnotationID:5247GeneID:5242
AnnotatorUID: diggins
Modification Date/Time: 2006-01-29 22:10:38
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:10484




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27629




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5242
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
195226
                           gb|AAP84148.1|
                           (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa]
                           94
                           98.93
                           98.93
                           0
                           462.0
     

     
     
195227
                           gb|AAO54393.1|
                           (AE016858) hypothetical protein PSPTO0858 [Pseudomonas syringae pv. tomato str. DC3000]
                           100
                           52.00
                           77.00
                           7
                           272.0
     

     






      

          
GC ORFID: 48244How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RL021Glimmer Score: 

          
Start: 4603672Stop: 4603956

          
Length: 285


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_RL021 94 Homolog: No significant similarity () translation of RL021Homolog Bit Score 182.0

          
Other Homologs:  psyr_15may02_Scaffold10_revised_gene164 (ORF: BLASTX 108.0)

          
GC ORF Sequence

           
ATGAGAGCTCTGAATTCGCTGACCCAGAACCTGATCGACAACCTGACCCAGATCCTGCAGAACCCCGAAGAG 
GATGCCCTGCAGACGCTAAGGATATGCGCTCCTGTACTGATAGAGGAGCTGCAGCAGATTCAACTGAGGGCA 
GTCGATCGCCGGGATATCGTCCCGCAGATAAAGCAGCTCTTGGATGAATGGCTGCAACAACATCCACAGCCT 
GATACGGCCCAACAGGCGCTCATTGAGGCCGTGGACCGCGCGGAGATCCTACAGCGGAGGCAAGCGTGA