ViewGene
Locus Name:
GeneID:
Location:

GeneID:5241
TrivialName: PA14_69580
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_69580
PAO1 Ortholog Locus:PA5269
Sequence Length:276
Protein Length:91
Start: 6207985
Stop: 6208260
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08654.1|AE004939_6 (AE004939) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 91/91 (100%), Positives = 91/91 (100%)
Sequence:
ATGAGCGAACAGGACGACAACCAGGAAGACGGCTTCGCCGAGGAAAAACTGATCCAGGCCATCGAGAACCAG
ATCGAAAGCGAGAATCCGCCGGCGGCGCGCGCCGTGTTCAACAAGCTGACCCTGGTCGGCTACGAGCGCGAC
GAGGCACTGGGCATGATGGCCTACGTGCTGGCCCACGAGATCAACGCCATGCTCGCCGCcGACCGCGCTTTC
GACAGCGCCGGCTACGAGCATGCGCTGCGTGCCCTGCCGACGTTGCCGGACGACGAATGA
Translation:
MSEQDDNQEDGFAEEKLIQAIENQIESENPPAARAVFNKLTLVGYERDEALGMMAYVLAHEINAMLAADRAF
DSAGYEHALRALPTLPDDE*
AnnotationID:5246GeneID:5241
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 08:08:19
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5269
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:10482




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27627




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5241
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7648
                           PA5269_tr
                           translation of PA5269
                           91
                           99.99
                           99.99
                           0
                           461.0
     

     
     
195223
                           gb|AAG08654.1|AE004939_6
                           (AE004939) hypothetical protein PA5269 [Pseudomonas aeruginosa PAO1]
                           91
                           99.99
                           99.99
                           0
                           461.0
     

     
     
195224
                           gb|AAO53778.1|
                           (AE016856) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           91
                           63.73
                           78.02
                           0
                           280.0
     

     
     
195225
                           gb|AAN65815.1|AE016210_3
                           (AE016774) conserved hypothetical protein [Pseudomonas putida KT2440]
                           100
                           60.00
                           72.00
                           9
                           276.0
     

     






      

          
GC ORFID: 48243How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5269Glimmer Score: 

          
Start: 5471672Stop: 5471947

          
Length: 276


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5269 translation of PA5269Homolog Bit Score 182.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3108 (ORF: BLASTX 110.0), t_PA5269 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGAACAGGACGACAACCAGGAAGACGGCTTCGCCGAGGAAAAACTGATCCAGGCCATCGAGAACCAG 
ATCGAAAGCGAGAATCCGCCGGCGGCGCGCGCCGTGTTCAACAAGCTGACCCTGGTCGGCTACGAGCGCGAC 
GAGGCACTGGGCATGATGGCCTACGTGCTGGCCCACGAGATCAACGCCATGCTCGCCGCcGACCGCGCTTTC 
GACAGCGCCGGCTACGAGCATGCGCTGCGTGCCCTGCCGACGTTGCCGGACGACGAATGA