ViewGene
Locus Name:
GeneID:
Location:

GeneID:5240
TrivialName: PA14_62250
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_62250
PAO1 Ortholog Locus:PA4703
Sequence Length:273
Protein Length:90
Start: 5554664
Stop: 5554936
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08089.1|AE004884_7 (AE004884) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 90/90 (100%), Positives = 90/90 (100%)
Sequence:
ATGAACGACGAACTGCTGAACCTGAAAAACCTCGGGAAAACCTCGACCCAATGGTTGCATGCCGTGGGTATC
CACAGCGCCACCGATCTGCGTCGGCTCGGCTCGGTGGGAGCCTATCGCGCGGTCCGCGCGCGCGGCTTCCGA
GCCTCGAAAGTCCTGCTCTATGCCATCGAAGGCGCACTTCTCGACGTTCACTGGAACGAGCTGTCCCCAGAC
CACAAGGCCGCACTGCTCGGCGAGCTGGAGACTTTCCCCGTGCGAAACAAGAGCTAG
Translation:
MNDELLNLKNLGKTSTQWLHAVGIHSATDLRRLGSVGAYRAVRARGFRASKVLLYAIEGALLDVHWNELSPD
HKAALLGELETFPVRNKS*
AnnotationID:5245GeneID:5240
AnnotatorUID: diggins
Modification Date/Time: 2005-03-09 05:05:25
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4703
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam04994
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam04994, TfoX_C, TfoX C-terminal domain.
CD-Length = 81 residues, 100.0% aligned
Score =  104 bits (260), Expect = 2e-24
Identities = 45/81 (55%), Positives = 50/81 (61%)






   
Genomic Context:






   
Comment:


















    ReferenceID:10480




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27625




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37613




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5240_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5240
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7647
                           PA4703_tr
                           translation of PA4703
                           90
                           99.99
                           99.99
                           0
                           461.0
     

     
     
195221
                           gb|AAG08089.1|AE004884_7
                           (AE004884) hypothetical protein PA4703 [Pseudomonas aeruginosa PAO1]
                           90
                           99.99
                           99.99
                           0
                           461.0
     

     
     
195222
                           gb|AAN70258.1|AE016666_2
                           (AE016791) conserved hypothetical protein [Pseudomonas putida KT2440]
                           92
                           69.56
                           81.52
                           2
                           321.0
     

     






      

          
GC ORFID: 48242How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4703Glimmer Score: 

          
Start: 4818344Stop: 4818616

          
Length: 273


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA4703 translation of PA4703Homolog Bit Score 182.0

          
Other Homologs:  t_PA4703 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACGACGAACTGCTGAACCTGAAAAACCTCGGGAAAACCTCGACCCAATGGTTGCATGCCGTGGGTATC 
CACAGCGCCACCGATCTGCGTCGGCTCGGCTCGGTGGGAGCCTATCGCGCGGTCCGCGCGCGCGGCTTCCGA 
GCCTCGAAAGTCCTGCTCTATGCCATCGAAGGCGCACTTCTCGACGTTCACTGGAACGAGCTGTCCCCAGAC 
CACAAGGCCGCACTGCTCGGCGAGCTGGAGACTTTCCCCGTGCGAAACAAGAGCTAG