ViewGene
Locus Name:
GeneID:
Location:

GeneID:524
TrivialName: PA14_59070
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_59070
PAO1 Ortholog Locus:
Sequence Length:1740
Protein Length:579
Start: 5260394
Stop: 5262133
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84227.1| (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa]
Identities = 579/579 (100%), Positives = 579/579 (100%)
Sequence:
ATGAGTATGGCCAAGATCAACCCGCAAGATCTGAAAGACCGGCTACTTGCCCCTGGTTTTACCGCACCGCCC
AAGGTTCTGGAGCAGTTGTCGGACCCGATCAGCGACACGCCCATGAGGCTGACACTCCACGACGTCCTCCCC
TGGCACGATAACCCCCGGACCACTCGAAACCCGAAATACGATGAGCTGAAAGAATCGATCCGACATCGAGGC
CTCGATACGCCGCCACCAGTGACTCGACGCCCTGGAGAGGACAAATACCGCATTCGCAACGGCGGAAACACT
CGCCTGGAAATTCTCAACGACCTCTACAAAGAGACCGGAGACGAGCGCTATTTCAGCTTCGACTGCCTGTTC
AAGCCCTGGGACAAGCAGCGCGGCGAAATCATCGCGCTGACCGGTCATTTGGCCGAGAACGATCTGAAGGGC
GACCTCAAGTTCATCGAGCGCGCGGTTGGGGTGCAGAAGGCGAAATTTCTTTACGAACAAGAGAACGGCGGT
GAAAGCATTTCCCAGCGCGAGTTGGCACGTCGGCTAAAAGCGGACGGCTACCCTGTATCTCAATCCCATATC
AGTAAGATGTTAGACACTATTGAGGTATTGGCGCCGGCGATTCCTGTGATGCTGTATTCAGGGCTCGGTAAA
CCGCAAATCGAGAAACTCCTGTCACTCAGAAAGTCGGCATCCTCCTGCTGGGCACGTCTATACGCTGGTGAA
GGGGTTGACTTCGAAATGCTGTTCCAGGACACCCTGGCAATCTTCGACAGTAGCCCTGACGAATTCATTTTC
GAGCGTTTCCAGGACGAACTCATCGACCAAATGAAGCGCCCCCTGGGCCTGCGTTATGACCAAATCCTGCTC
GAGATTACCAACGGGCAGCAGGAGCAACGCCGCGGCACTCTGGTCGACCTGCCCACACCTGCCGCACCACCT
CAACTCCCACCAATTGGGCAGGAAAACCCTGCTGCGTCGTCTACTGGACAAGCACAAACACAGAGCCCCGCC
GCAGATCCCCAAACGTCCAGGACAAGGAGCAACCCGGGTAATCCCCTCCCCCCGCCGGCTCCGCCACCACCT
GTCCAACAAAAGCAATTGCCCGATGAGGAGCGTGCGGCGGTCTTGGCAGGCCATATCGTGAGCCCGGTATCG
ACTAAGATCCAGCAGACTCGCCAACGGCTGGCCGGCCTCGAGGGGGAACATCTACCTGTCTTCGATGAAACA
GCTCTGCAGGCAATCCCAGTGCAAGTCGGTGGCCTGCACCCGATCACCGATCTCTGGTACATCGAGCGGTCG
ATCGATACCCCCGAGATCCTGCGACAGCACATCGCTGATCTGGCTGAAGAGATCGCTCTGCATGTCGGCGCC
CCAGGCGAGATCGTCAGGATTCAGGGCGGTGTGGGTTACACGTATCGCGAGCCCAATGAAGACCATGAGATT
ACTGATTCAGCGCTGCACCTCATGACGCTGCTTCAAGCGGTCAGCGGGCAGGTCCAAGTCGTTCTGAACACT
CACGATCAACAGACCTGCCGCGATGCACTGGGTGAATTCCAGTTCTCAGCTGGCCTCGCTCAGTTGCTGCTG
GGCCAACCCACCACAAGTGACAAGCCATCCTGCCAGGCAGGCCGTCTCAATGACGAAGCCCTGGTGAAACTG
TTCCGGATCATTCGTCTTGCCCGACGCCTGGTTGACCTTGAGCTGCCGCCGGCCGCCTCCGAGCAAGCAGCT
ACTGACCAGTGA
Translation:
MSMAKINPQDLKDRLLAPGFTAPPKVLEQLSDPISDTPMRLTLHDVLPWHDNPRTTRNPKYDELKESIRHRG
LDTPPPVTRRPGEDKYRIRNGGNTRLEILNDLYKETGDERYFSFDCLFKPWDKQRGEIIALTGHLAENDLKG
DLKFIERAVGVQKAKFLYEQENGGESISQRELARRLKADGYPVSQSHISKMLDTIEVLAPAIPVMLYSGLGK
PQIEKLLSLRKSASSCWARLYAGEGVDFEMLFQDTLAIFDSSPDEFIFERFQDELIDQMKRPLGLRYDQILL
EITNGQQEQRRGTLVDLPTPAAPPQLPPIGQENPAASSTGQAQTQSPAADPQTSRTRSNPGNPLPPPAPPPP
VQQKQLPDEERAAVLAGHIVSPVSTKIQQTRQRLAGLEGEHLPVFDETALQAIPVQVGGLHPITDLWYIERS
IDTPEILRQHIADLAEEIALHVGAPGEIVRIQGGVGYTYREPNEDHEITDSALHLMTLLQAVSGQVQVVLNT
HDQQTCRDALGEFQFSAGLAQLLLGQPTTSDKPSCQAGRLNDEALVKLFRIIRLARRLVDLELPPAASEQAA
TDQ*
AnnotationID:533GeneID:524
AnnotatorUID: danlee
Modification Date/Time: 2006-05-13 13:01:20
Gene Name:RL102
Confidence Code:4
GeneProduct:conserved Hypothetical Protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:1051




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18193




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:38283




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:524_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:524
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
37033
                           gb|AAP84227.1|
                           (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa]
                           579
                           99.99
                           99.99
                           0
                           3003.0
     

     
     
37034
                           gb|AAN62323.1|AF440524_110
                           (AF440524) conserved hypothetical protein [Pseudomonas aeruginosa]
                           592
                           44.25
                           58.95
                           50
                           1158.0
     

     
     
37035
                           gb|AAN62200.1|AF440523_107
                           (AF440523) conserved hypothetical protein [Pseudomonas aeruginosa]
                           600
                           43.66
                           57.66
                           62
                           1137.0
     

     
     
37037
                           emb|CAE92953.1|
                           (AJ617740) hypothetical protein [Pseudomonas putida]
                           594
                           43.60
                           56.73
                           59
                           1116.0
     

     
     
37038
                           emb|CAD60667.1|
                           (AJ536665) hypothetical protein [Pseudomonas sp. B13]
                           594
                           43.60
                           56.73
                           59
                           1116.0
     

     






      

          
GC ORFID: 43526How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RL102Glimmer Score: 

          
Start: 4524073Stop: 4525812

          
Length: 1740


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_RL102 579 Homolog: XAC2206 / Hypothetical protein / X.axonopodis pv. citri / 306 (AAM37059) translation of RL102Homolog Bit Score 1161.0

          
Other Homologs:  psyr_15may02_Scaffold10_revised_gene1572 (ORF: BLASTX 535.0), t_RL102 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTATGGCCAAGATCAACCCGCAAGATCTGAAAGACCGGCTACTTGCCCCTGGTTTTACCGCACCGCCC 
AAGGTTCTGGAGCAGTTGTCGGACCCGATCAGCGACACGCCCATGAGGCTGACACTCCACGACGTCCTCCCC 
TGGCACGATAACCCCCGGACCACTCGAAACCCGAAATACGATGAGCTGAAAGAATCGATCCGACATCGAGGC 
CTCGATACGCCGCCACCAGTGACTCGACGCCCTGGAGAGGACAAATACCGCATTCGCAACGGCGGAAACACT 
CGCCTGGAAATTCTCAACGACCTCTACAAAGAGACCGGAGACGAGCGCTATTTCAGCTTCGACTGCCTGTTC 
AAGCCCTGGGACAAGCAGCGCGGCGAAATCATCGCGCTGACCGGTCATTTGGCCGAGAACGATCTGAAGGGC 
GACCTCAAGTTCATCGAGCGCGCGGTTGGGGTGCAGAAGGCGAAATTTCTTTACGAACAAGAGAACGGCGGT 
GAAAGCATTTCCCAGCGCGAGTTGGCACGTCGGCTAAAAGCGGACGGCTACCCTGTATCTCAATCCCATATC 
AGTAAGATGTTAGACACTATTGAGGTATTGGCGCCGGCGATTCCTGTGATGCTGTATTCAGGGCTCGGTAAA 
CCGCAAATCGAGAAACTCCTGTCACTCAGAAAGTCGGCATCCTCCTGCTGGGCACGTCTATACGCTGGTGAA 
GGGGTTGACTTCGAAATGCTGTTCCAGGACACCCTGGCAATCTTCGACAGTAGCCCTGACGAATTCATTTTC 
GAGCGTTTCCAGGACGAACTCATCGACCAAATGAAGCGCCCCCTGGGCCTGCGTTATGACCAAATCCTGCTC 
GAGATTACCAACGGGCAGCAGGAGCAACGCCGCGGCACTCTGGTCGACCTGCCCACACCTGCCGCACCACCT 
CAACTCCCACCAATTGGGCAGGAAAACCCTGCTGCGTCGTCTACTGGACAAGCACAAACACAGAGCCCCGCC 
GCAGATCCCCAAACGTCCAGGACAAGGAGCAACCCGGGTAATCCCCTCCCCCCGCCGGCTCCGCCACCACCT 
GTCCAACAAAAGCAATTGCCCGATGAGGAGCGTGCGGCGGTCTTGGCAGGCCATATCGTGAGCCCGGTATCG 
ACTAAGATCCAGCAGACTCGCCAACGGCTGGCCGGCCTCGAGGGGGAACATCTACCTGTCTTCGATGAAACA 
GCTCTGCAGGCAATCCCAGTGCAAGTCGGTGGCCTGCACCCGATCACCGATCTCTGGTACATCGAGCGGTCG 
ATCGATACCCCCGAGATCCTGCGACAGCACATCGCTGATCTGGCTGAAGAGATCGCTCTGCATGTCGGCGCC 
CCAGGCGAGATCGTCAGGATTCAGGGCGGTGTGGGTTACACGTATCGCGAGCCCAATGAAGACCATGAGATT 
ACTGATTCAGCGCTGCACCTCATGACGCTGCTTCAAGCGGTCAGCGGGCAGGTCCAAGTCGTTCTGAACACT 
CACGATCAACAGACCTGCCGCGATGCACTGGGTGAATTCCAGTTCTCAGCTGGCCTCGCTCAGTTGCTGCTG 
GGCCAACCCACCACAAGTGACAAGCCATCCTGCCAGGCAGGCCGTCTCAATGACGAAGCCCTGGTGAAACTG 
TTCCGGATCATTCGTCTTGCCCGACGCCTGGTTGACCTTGAGCTGCCGCCGGCCGCCTCCGAGCAAGCAGCT 
ACTGACCAGTGA