ViewGene

Locus Name:
GeneID:
Location:

GeneID:5239
TrivialName: PA14_57980
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_57980
PAO1 Ortholog Locus:PA4466
Sequence Length:273
Protein Length:90
Start: 5159710
Stop: 5159982
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07854.1|AE004860_10 (AE004860) probable phosphoryl carrier protein [Pseudomonas aeruginosa PAO1]
Identities = 90/90 (100%), Positives = 90/90 (100%)
Sequence:
ATGCCCGCCCTCGAGATCACCATCATCAACAAGCTCGGTCTGCACGCCCGCGCGGCGGCCAAGTTCGTCGGC
GTCGCGGGGCGCTACCCTTGCCAGGTCCGGGTCGGCCGCAATCCTGAAAGCTGCGTCGACGGCAAGAGCATC
ATGGCCGTGATGATGCTGGCTGCCGGCAAGGGCACCAACCTGCACCTGCATACCGAAGGCGAACAGGAAGAC
GAGGCGTTGAACGCACTGGTCGAACTGATCAACAACCGTTTCGACGAAGGCGAGTAG
Translation:
MPALEITIINKLGLHARAAAKFVGVAGRYPCQVRVGRNPESCVDGKSIMAVMMLAAGKGTNLHLHTEGEQED
EALNALVELINNRFDEGE*
AnnotationID:5244GeneID:5239
AnnotatorUID: diggins
Modification Date/Time: 2005-05-03 07:07:54
Gene Name:
Confidence Code:3
GeneProduct:putative phosphoryl carrier protein
Cell Localization:()
Synonyms:PA4466
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1925,cd00367,pfam00381
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN66573.1|AE016285_11 (AE016777) phosphotransferase system, NPr protein [Pseudomonas
          putida KT2440]
          Length = 90

 Score =  154 bits (390), Expect = 8e-38
 Identities = 76/90 (84%), Positives = 83/90 (92%)

>gb|AAO57906.1| (AE016872) phosphocarrier protein HPr [Pseudomonas syringae pv.
          tomato str. DC3000]
          Length = 90

 Score =  150 bits (379), Expect = 1e-36
 Identities = 72/90 (80%), Positives = 83/90 (92%)

>emb|CAB83692.1| (AL162753) sugar transport PTS system phosphocarrier protein HPR
          [Neisseria meningitidis Z2491]
          Length = 89

 Score = 87.4 bits (215), Expect = 2e-17
 Identities = 48/85 (56%), Positives = 60/85 (70%), Gaps = 1/85 (1%)
Structural Features:
COG1925, FruB, Phosphotransferase system, HPr-related proteins 
[Carbohydrate transport and metabolism]
CD-Length = 88 residues,  98.9% aligned
Score = 96.0 bits (239), Expect = 1e-21
Identities = 40/88 (45%), Positives = 53/88 (60%), Gaps = 1/88 (1%)

cd00367, PTS-HPr, Histidine-containing phosphocarrier protein ( HPr)
CD-Length = 83 residues,  96.4% aligned
Score = 79.6 bits (196), Expect = 1e-16
Identities = 36/81 (44%), Positives = 51/81 (62%), Gaps = 1/81 (1%)

pfam00381, PTS-HPr, PTS HPr component phosphorylation site.
CD-Length = 84 residues,  95.2% aligned
Score = 78.4 bits (193), Expect = 3e-16
Identities = 36/81 (44%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Genomic Context:
Comment:
ReferenceID:10478
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27623
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31506
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:5239_cdd.html
URL:
Homologs By Global Alignment
Gene ID:5239

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7646 PA4466_tr translation of PA4466 90 99.99 99.99 0 461.0
195216 gb|AAG07854.1|AE004860_10 (AE004860) probable phosphoryl carrier protein [Pseudomonas aeruginosa PAO1] 90 99.99 99.99 0 461.0
195217 gb|AAN66573.1|AE016285_11 (AE016777) phosphotransferase system, NPr protein [Pseudomonas putida KT2440] 90 84.44 92.22 0 390.0
195219 emb|CAA07606.1| (AJ007699) NPr protein [Pseudomonas putida] 90 82.22 90.00 0 377.0
195218 gb|AAO57906.1| (AE016872) phosphocarrier protein HPr [Pseudomonas syringae pv. tomato str. DC3000] 90 80.00 92.22 0 379.0
GC ORFID: 48241How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4466Glimmer Score:
Start: 4423389Stop: 4423661
Length: 273
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA4466 translation of PA4466Homolog Bit Score 182.0
Other Homologs: psyr_15may02_Scaffold4_revised_gene5551 (ORF: BLASTX 153.0), t_PA4466 (ORF: GLIMMER)
GC ORF Sequence
ATGCCCGCCCTCGAGATCACCATCATCAACAAGCTCGGTCTGCACGCCCGCGCGGCGGCCAAGTTCGTCGGC
GTCGCGGGGCGCTACCCTTGCCAGGTCCGGGTCGGCCGCAATCCTGAAAGCTGCGTCGACGGCAAGAGCATC
ATGGCCGTGATGATGCTGGCTGCCGGCAAGGGCACCAACCTGCACCTGCATACCGAAGGCGAACAGGAAGAC
GAGGCGTTGAACGCACTGGTCGAACTGATCAACAACCGTTTCGACGAAGGCGAGTAG