ViewGene

Locus Name:
GeneID:
Location:

GeneID:5238
TrivialName: PA14_09350
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_09350
PAO1 Ortholog Locus:PA4220
Sequence Length:282
Protein Length:93
Start: 802180
Stop: 802461
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07608.1|AE004839_1 (AE004839) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 89/93 (95%), Positives = 90/93 (96%)
Sequence:
ATGCCGCGCCGGCCGGGCTTCGGCTGGGCCTGGCGGGTTCCGCTGGCACTCGCCGGCAGCCTGGCGGCGGCG
ACCGCCAGCGGCTATCTGTTGACTCGCGGGCTGCCCCTGGACGACCCGCTCGAGCGTCTCTACGCCGGGCTC
TTCGGCGCGCTCGGGGTGGGCTTGTTGCTGCTTGTCGGCGGGTTGCTGGCGCGTGATCCGGGCAACTTCGCC
TGGCGCCTGGGCGGTAGCCTGCTGGCACTGGGCCTGGCGTTGTGGCTGCTGGCGGGGCGCGGTTGA
Translation:
MPRRPGFGWAWRVPLALAGSLAAATASGYLLTRGLPLDDPLERLYAGLFGALGVGLLLLVGGLLARDPGNFA
WRLGGSLLALGLALWLLAGRG*
AnnotationID:5243GeneID:5238
AnnotatorUID: diggins
Modification Date/Time: 2005-04-01 06:06:15
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:fptB
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:10476
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27621
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:5238

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7645 PA4220_tr translation of PA4220 93 95.69 96.77 0 461.0
195214 gb|AAG07608.1|AE004839_1 (AE004839) hypothetical protein PA4220 [Pseudomonas aeruginosa PAO1] 93 95.69 96.77 0 461.0
195215 gb|AAC43214.1| (U03161) predicted protein of 93 amino acids, MW of 9569 [Pseudomonas aeruginosa] 93 95.69 96.77 0 461.0
GC ORFID: 48240How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4220Glimmer Score:
Start: 4151757Stop: 4151476
Length: 282
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4220 translation of PA4220Homolog Bit Score 182.0
Other Homologs:
GC ORF Sequence
ATGCCGCGCCGGCCGGGCTTCGGCTGGGCCTGGCGGGTTCCGCTGGCACTCGCCGGCAGCCTGGCGGCGGCG
ACCGCCAGCGGCTATCTGTTGACTCGCGGGCTGCCCCTGGACGACCCGCTCGAGCGTCTCTACGCCGGGCTC
TTCGGCGCGCTCGGGGTGGGCTTGTTGCTGCTTGTCGGCGGGTTGCTGGCGCGTGATCCGGGCAACTTCGCC
TGGCGCCTGGGCGGTAGCCTGCTGGCACTGGGCCTGGCGTTGTGGCTGCTGGCGGGGCGCGGTTGA