ViewGene
Locus Name:
GeneID:
Location:

GeneID:5237
TrivialName: PA14_28020
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_28020
PAO1 Ortholog Locus:PA2791
Sequence Length:291
Protein Length:96
Start: 2425622
Stop: 2425912
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06179.1|AE004706_9 (AE004706) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 90/96 (93%), Positives = 91/96 (94%)
Sequence:
ATGAAGTGGTATAGCCGCATCAGCCTGGGGCTCAGCCTCGCGGTCGCGAGCGCTTTCCTGGTGGCGTACTGG
CGATCGCTCGACAGCCATGGCTATCCCAATATGAATGCGCCTGGGCTGTTCGCCTACCTGCTGGTCTTTCCT
GCCTGCGCCCTGTTGCTGCATTCCACTGCGTTGGCATTCGTGCTCCAGCAGCGAAAGCTGGGGAGCGCTCGC
GAAAGAGCGCTGCAATGGATGATCAACCTGGCGCTGTGGATGGCGCCGCTTTGTTTCATATTTTCCAGTCTT
TAA
Translation:
MKWYSRISLGLSLAVASAFLVAYWRSLDSHGYPNMNAPGLFAYLLVFPACALLLHSTALAFVLQQRKLGSAR
ERALQWMINLALWMAPLCFIFSSL*
AnnotationID:5242GeneID:5237
AnnotatorUID: diggins
Modification Date/Time: 2005-04-06 03:03:00
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA2791
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:10474




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27619




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5237
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7644
                           PA2791_tr
                           translation of PA2791
                           96
                           93.75
                           94.79
                           0
                           462.0
     

     
     
195213
                           gb|AAG06179.1|AE004706_9
                           (AE004706) hypothetical protein PA2791 [Pseudomonas aeruginosa PAO1]
                           96
                           93.75
                           94.79
                           0
                           462.0
     

     






      

          
GC ORFID: 48239How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2791Glimmer Score: 

          
Start: 2528304Stop: 2528014

          
Length: 291


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA2791 translation of PA2791Homolog Bit Score 182.0

          
Other Homologs:  t_PA2791 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAGTGGTATAGCCGCATCAGCCTGGGGCTCAGCCTCGCGGTCGCGAGCGCTTTCCTGGTGGCGTACTGG 
CGATCGCTCGACAGCCATGGCTATCCCAATATGAATGCGCCTGGGCTGTTCGCCTACCTGCTGGTCTTTCCT 
GCCTGCGCCCTGTTGCTGCATTCCACTGCGTTGGCATTCGTGCTCCAGCAGCGAAAGCTGGGGAGCGCTCGC 
GAAAGAGCGCTGCAATGGATGATCAACCTGGCGCTGTGGATGGCGCCGCTTTGTTTCATATTTTCCAGTCTT 
TAA