ViewGene
Locus Name:
GeneID:
Location:

GeneID:5236
TrivialName: PA14_29250
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_29250
PAO1 Ortholog Locus:PA2697
Sequence Length:282
Protein Length:93
Start: 2531346
Stop: 2531627
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06085.1|AE004698_1 (AE004698) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 92/93 (98%), Positives = 92/93 (98%)
Sequence:
ATGAAGCTCTACGTATTGTCGCTGGGCGCCGGACTGTTGGTGGGGATCGTCTACAGCCTGCTGCAGGTGCGT
TCGCCGGCTCCGCCGCTGGTGGCGCTGGTGGGGTTGCTCGGCATCCTGCTCGGCGAGCAGGTCATCCCGGTC
GGCAAGCAATTGCTCGGCGGTTGCGCGTTCGCCTCGGCCTGCGACAAGGCGGGTTCGGTCGGCCATGTGCTG
GGGCAACTACCGGGTCGGCATCGCCTCGACCAGGCCGCTGGCCCGTCGGAACAGGAAAAGGGTTGA
Translation:
MKLYVLSLGAGLLVGIVYSLLQVRSPAPPLVALVGLLGILLGEQVIPVGKQLLGGCAFASACDKAGSVGHVL
GQLPGRHRLDQAAGPSEQEKG*
AnnotationID:5241GeneID:5236
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 20:08:01
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2697
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAC52223.1| (AP005960) bsl6958 [Bradyrhizobium japonicum USDA 110]
          Length = 97

 Score =  111 bits (278), Expect = 7e-25
 Identities = 59/94 (62%), Positives = 69/94 (73%), Gaps = 2/94 (2%)

>dbj|BAC49523.1| (AP005950) bsr4258 [Bradyrhizobium japonicum USDA 110]
          Length = 94

 Score =  105 bits (263), Expect = 4e-23
 Identities = 51/79 (64%), Positives = 63/79 (79%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10472




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27617




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36326




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5236_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5236
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7643
                           PA2697_tr
                           translation of PA2697
                           93
                           98.92
                           98.92
                           0
                           463.0
     

     
     
195210
                           gb|AAG06085.1|AE004698_1
                           (AE004698) hypothetical protein PA2697 [Pseudomonas aeruginosa PAO1]
                           93
                           98.92
                           98.92
                           0
                           463.0
     

     
     
195211
                           dbj|BAC52223.1|
                           (AP005960) bsl6958 [Bradyrhizobium japonicum USDA 110]
                           98
                           62.24
                           71.42
                           6
                           281.0
     

     
     
195212
                           dbj|BAC49523.1|
                           (AP005950) bsr4258 [Bradyrhizobium japonicum USDA 110]
                           94
                           56.38
                           71.27
                           1
                           262.0
     

     






      

          
GC ORFID: 48238How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2697Glimmer Score: 

          
Start: 2422580Stop: 2422299

          
Length: 282


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2697 translation of PA2697Homolog Bit Score 182.0

          
Other Homologs:  t_PA2697 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAGCTCTACGTATTGTCGCTGGGCGCCGGACTGTTGGTGGGGATCGTCTACAGCCTGCTGCAGGTGCGT 
TCGCCGGCTCCGCCGCTGGTGGCGCTGGTGGGGTTGCTCGGCATCCTGCTCGGCGAGCAGGTCATCCCGGTC 
GGCAAGCAATTGCTCGGCGGTTGCGCGTTCGCCTCGGCCTGCGACAAGGCGGGTTCGGTCGGCCATGTGCTG 
GGGCAACTACCGGGTCGGCATCGCCTCGACCAGGCCGCTGGCCCGTCGGAACAGGAAAAGGGTTGA