ViewGene

Locus Name:
GeneID:
Location:

GeneID:5235
TrivialName: PA14_31420
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_31420
PAO1 Ortholog Locus:PA2560
Sequence Length:288
Protein Length:95
Start: 2732652
Stop: 2732939
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05948.1|AE004684_3 (AE004684) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 93/95 (97%), Positives = 94/95 (98%)
Sequence:
ATGGATGTCCCTCCCACCGTTCAGGATGAACAGGCCGTTTCCCGCCAGTTGCACTCGTTGAGTGTGCGCAAT
CTCGCTCACTTGGCTGCCGCCCTGACCCAGCTCGGCTTCGAGCTGTCGCGCAGCTCCGACCCTGGCACCCGC
CAGGCGGCCAATGCCTTCATCGGCCAGTTGGCCAATATCAACCAGGACATCGATCGACAGATCGAGCTGCTC
GGCGCGCTGGACGCCGACAGCGTGGGGTTTCGCCTGCTGGACGAGGTGCAATACCCGGATGCGCCCGAATGA
Translation:
MDVPPTVQDEQAVSRQLHSLSVRNLAHLAAALTQLGFELSRSSDPGTRQAANAFIGQLANINQDIDRQIELL
GALDADSVGFRLLDEVQYPDAPE*
AnnotationID:5240GeneID:5235
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 06:06:49
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA2560
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:10470
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27615
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:5235

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7642 PA2560_tr translation of PA2560 95 97.89 98.94 0 463.0
195209 gb|AAG05948.1|AE004684_3 (AE004684) hypothetical protein PA2560 [Pseudomonas aeruginosa PAO1] 95 97.89 98.94 0 463.0
GC ORFID: 48237How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2560Glimmer Score:
Start: 2221274Stop: 2220987
Length: 288
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2560 translation of PA2560Homolog Bit Score 182.0
Other Homologs: t_PA2560 (ORF: GLIMMER)
GC ORF Sequence
ATGGATGTCCCTCCCACCGTTCAGGATGAACAGGCCGTTTCCCGCCAGTTGCACTCGTTGAGTGTGCGCAAT
CTCGCTCACTTGGCTGCCGCCCTGACCCAGCTCGGCTTCGAGCTGTCGCGCAGCTCCGACCCTGGCACCCGC
CAGGCGGCCAATGCCTTCATCGGCCAGTTGGCCAATATCAACCAGGACATCGATCGACAGATCGAGCTGCTC
GGCGCGCTGGACGCCGACAGCGTGGGGTTTCGCCTGCTGGACGAGGTGCAATACCCGGATGCGCCCGAATGA