ViewGene
Locus Name:
GeneID:
Location:

GeneID:5234
TrivialName: PA14_52500
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52500
PAO1 Ortholog Locus:PA0909
Sequence Length:276
Protein Length:91
Start: 4657814
Stop: 4657539
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04298.1|AE004525_6 (AE004525) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 91/91 (100%), Positives = 91/91 (100%)
Sequence:
ATGGTTGACCCGCTGTCCACCCTGACCGTGCTGGTCTGCTCGGCGATCTGCATGCGCCTGATCACCTATCGC
CGCGCCGGCGCGCGTTTCCGCCCCGGCGTTTCCCTGTGCGCCTACCTGCTGGCGTTGTGCACCGGCTGCCAG
GCGCTGGGAATAGTGGCCGGGCTGTATCGCGCCGAGCACCTCTCGCCGTGGATGCTCGGGGTACTGCTGGTG
CTGCTGGTCCTGCTGTTGCAGGCGCGTGGCAACCTGGCGCGGGTCCTGCGCCTGCATTGA
Translation:
MVDPLSTLTVLVCSAICMRLITYRRAGARFRPGVSLCAYLLALCTGCQALGIVAGLYRAEHLSPWMLGVLLV
LLVLLLQARGNLARVLRLH*
AnnotationID:5239GeneID:5234
AnnotatorUID: danlee
Modification Date/Time: 2004-05-06 13:01:57
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0909
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam05449
Secondary Functional Category(ies):Membrane proteins; Related to phage, transposon, or plasmid 
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam05449, DUF754, Protein of unknown function (DUF754). This domain appears 
to be found in a group of prophage proteins.
       CD-Length = 85 residues,  97.6% aligned
       Score = 73.4 bits (180), Expect = 4e-15






   
Genomic Context:






   
Comment:


















    ReferenceID:10468




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27613




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5234
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7641
                           PA0909_tr
                           translation of PA0909
                           91
                           99.99
                           99.99
                           0
                           461.0
     

     
     
195208
                           gb|AAG04298.1|AE004525_6
                           (AE004525) hypothetical protein PA0909 [Pseudomonas aeruginosa PAO1]
                           91
                           99.99
                           99.99
                           0
                           461.0
     

     






      

          
GC ORFID: 48236How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0909Glimmer Score: 

          
Start: 296093Stop: 296368

          
Length: 276


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0909 translation of PA0909Homolog Bit Score 182.0

          
Other Homologs:  t_PA0909 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGTTGACCCGCTGTCCACCCTGACCGTGCTGGTCTGCTCGGCGATCTGCATGCGCCTGATCACCTATCGC 
CGCGCCGGCGCGCGTTTCCGCCCCGGCGTTTCCCTGTGCGCCTACCTGCTGGCGTTGTGCACCGGCTGCCAG 
GCGCTGGGAATAGTGGCCGGGCTGTATCGCGCCGAGCACCTCTCGCCGTGGATGCTCGGGGTACTGCTGGTG 
CTGCTGGTCCTGCTGTTGCAGGCGCGTGGCAACCTGGCGCGGGTCCTGCGCCTGCATTGA