ViewGene
Locus Name:
GeneID:
Location:

GeneID:5233
TrivialName: PA14_52960
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52960
PAO1 Ortholog Locus:PA0874
Sequence Length:267
Protein Length:88
Start: 4695869
Stop: 4696135
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04263.1|AE004522_5 (AE004522) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 88/88 (100%), Positives = 88/88 (100%)
Sequence:
ATGAAGGCTTTCGCCCTGATGGCCCTGTTCGCCTGCTCGCCGCTGGTGATGGCGGCTGGCGCCCAGGATCAA
CCTGCCAGCCAGCAGGAAAACGCTGTTGAAGAATATGCCTATGGCATGCAACTGGATGTGGCTCGCGTTATA
TCTTCAACCGACACTTCCAATGCCTGCGGCATCGTTCCCGCACGCATGACCTACGAAGATTCGAACGGGCAG
AAACATACCGTCGAATATCAGGTCTGGGGCAACGGCTGCACTGGCGGCTAA
Translation:
MKAFALMALFACSPLVMAAGAQDQPASQQENAVEEYAYGMQLDVARVISSTDTSNACGIVPARMTYEDSNGQ
KHTVEYQVWGNGCTGG*
AnnotationID:5238GeneID:5233
AnnotatorUID: danlee
Modification Date/Time: 2004-05-03 12:12:32
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0874
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10466




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27611




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5233
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7640
                           PA0874_tr
                           translation of PA0874
                           88
                           99.99
                           99.99
                           0
                           461.0
     

     
     
195207
                           gb|AAG04263.1|AE004522_5
                           (AE004522) hypothetical protein PA0874 [Pseudomonas aeruginosa PAO1]
                           88
                           99.99
                           99.99
                           0
                           461.0
     

     






      

          
GC ORFID: 48235How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0874Glimmer Score: 

          
Start: 258038Stop: 257772

          
Length: 267


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA0874 translation of PA0874Homolog Bit Score 182.0

          
Other Homologs:  t_PA0874 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAGGCTTTCGCCCTGATGGCCCTGTTCGCCTGCTCGCCGCTGGTGATGGCGGCTGGCGCCCAGGATCAA 
CCTGCCAGCCAGCAGGAAAACGCTGTTGAAGAATATGCCTATGGCATGCAACTGGATGTGGCTCGCGTTATA 
TCTTCAACCGACACTTCCAATGCCTGCGGCATCGTTCCCGCACGCATGACCTACGAAGATTCGAACGGGCAG 
AAACATACCGTCGAATATCAGGTCTGGGGCAACGGCTGCACTGGCGGCTAA