ViewGene
Locus Name:
GeneID:
Location:

GeneID:5231
TrivialName: PA14_71370
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_71370
PAO1 Ortholog Locus:PA5407
Sequence Length:291
Protein Length:96
Start: 6356997
Stop: 6357287
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08792.1|AE004953_6 (AE004953) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 96/96 (100%), Positives = 96/96 (100%)
Sequence:
ATGAGCCGCGACGGCGTCCAGGTCCTGTCGATCCTCGGCCGGGACTATTCGATCCGCGTGCCGGCCGGCGAG
GAGCGGGCCCTCGCGGACGCCGCCGCGTTGCTGCAGGCGGAAGTGGACGCCAACAAGCGCAAGTTTCCCTAC
GTCACCAGCAACGAGCTGGTGGTGCTCTCCGCGCTCAACCTCTGCGCCCGCCAGCTCGGCGCGAACGACGGC
GAGTCGCCGCGCCTGCGGGCGGTGGAGCAGCGCCTGGAGGCGCTGGTCGAGCGGATCGCCGGGGCATCCGGC
TAG
Translation:
MSRDGVQVLSILGRDYSIRVPAGEERALADAAALLQAEVDANKRKFPYVTSNELVVLSALNLCARQLGANDG
ESPRLRAVEQRLEALVERIAGASG*
AnnotationID:5236GeneID:5231
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 11:11:34
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5407
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10462




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27607




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34650




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5231_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5231
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7639
                           PA5407_tr
                           translation of PA5407
                           96
                           99.99
                           99.99
                           0
                           464.0
     

     
     
195206
                           gb|AAG08792.1|AE004953_6
                           (AE004953) hypothetical protein PA5407 [Pseudomonas aeruginosa PAO1]
                           96
                           99.99
                           99.99
                           0
                           464.0
     

     






      

          
GC ORFID: 48233How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5407Glimmer Score: 

          
Start: 5620686Stop: 5620976

          
Length: 291


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA5407 translation of PA5407Homolog Bit Score 183.0

          
Other Homologs:  t_PA5407 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCGCGACGGCGTCCAGGTCCTGTCGATCCTCGGCCGGGACTATTCGATCCGCGTGCCGGCCGGCGAG 
GAGCGGGCCCTCGCGGACGCCGCCGCGTTGCTGCAGGCGGAAGTGGACGCCAACAAGCGCAAGTTTCCCTAC 
GTCACCAGCAACGAGCTGGTGGTGCTCTCCGCGCTCAACCTCTGCGCCCGCCAGCTCGGCGCGAACGACGGC 
GAGTCGCCGCGCCTGCGGGCGGTGGAGCAGCGCCTGGAGGCGCTGGTCGAGCGGATCGCCGGGGCATCCGGC 
TAG