ViewGene
Locus Name:
GeneID:
Location:

GeneID:523
TrivialName: PA14_32590
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_32590
PAO1 Ortholog Locus:PA2478
Sequence Length:1770
Protein Length:589
Start: 2829794
Stop: 2831563
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05866.1|AE004675_7 (AE004675) probable thiol:disulfide interchange protein [Pseudomonas aeruginosa PAO1]
Identities = 584/589 (99%), Positives = 584/589 (99%), Gaps = 2/589 (0%)
Sequence:
ATGCGTGTGTTGATCCTGCTCCTGATGTTCCTGCTGCCGGGCCTGTCCCAGGCGCAACCGGGCGACGACCTG
TTCGCGCCGCGCGGCGCGACGCAGACGGATTTCCTGCCGGTGGAGAAAGCCTTCCGCTTCACCTGGGAGCGC
CTCGACGACGGCCAGGTGCAACTGCGCTGGCAGATCGCGCCGGGCTACTACCTGTACCAGAAGCGCCTGCGC
TTCGACGGACTCGACCCGGCCTTGCAGCCGCAGCTGCCGCCGGGCGAAAGCCACAGCGACGAGTTCTTCGGC
GAGTCGCAGGTCTATCGCCAGAGCCTGGAACTGACCCTGCCGGCGGCCGCCGCCGGACAACTGCGCCTGGGC
TGGCAGGGCTGCGCTGACGCCGGCCTGTGCTATCCGCCGCAGAGCCAGGCGCTCGACCTGGGCGGTACCGGC
CCTGCCGCCGCCGTCGCCGGGACGAGCGGCGAAGTCGCCGAGGACCAGGGCCTGGCCGGCAGCCTGCAGGCC
GGCAACCTGGCCTGGAGCCTGTTGCTGTTCTTCGGCCTCGGCCTGTTGCTGGCGTTCGCTCCCTGTTCGCTG
CCGATGCTGCCGATCCTCGCCGGGCTGGTGGTCGGCAGCGGCGCCCGCCCTCGTCGCGGCCTGTTGCTGGCC
GGTAGCTACGTGCTGAGCATGGCGCTGGTCTACGCCGGACTCGGGGTGGTCGCGGCGCTGCTTGGCGGCAAC
CTGCAGGCCTGGCTGCAACAGCCGTGGCTGCTGGGCAGCTTCGCCGCGCTGTTCGTGTTCCTCGCGCTGCCG
ATGTTCGGCTTCTTCGAACTGCAACTGCCGGCGGCCCTGCGCGACCGCCTCGACGGTCTCAGTCGCGGCCGC
AAGGGCGGCAGCCTGGCCGGCGCGGCCGCGCTCGGCGCGTTGTCCGGGCTGCTGGTGGGGCCGTGCATGACC
GCGCCGCTGGCCGGCGCCTTGCTCTATATCGCGCAGACCGGCAATGCCCTGCATGGCGGCCTGGTGCTGTTC
AGCCTGGGCCTCGGCATCGGCATGCCGCTGTTGCTGCTGGTGACGGTCGGCAGCCGCTTCCTGCCCAAGCCC
GGTCCCTGGATGAACCTGGTCAAGGGCGTGTTCGGCTTCCTTTTCCTCGGCACCGCCTGGATACTCCTGCGT
CCGCTGCTCGGCGAGGCGCTGTGGATCGGCCTTGGCGGCGCGTTGCTGCTGGTCCTGGCCTACGCCGCGCTG
CACACGGCGCGAGGCCTGGCACGGCACGCGGTGCTGTTCGGCGCGGCGGGCTGCATCTTCGGTCTCTGGGGC
GCGGCGATGCTGCTGGGCGCCGCGGCCGGGGCAGACGACCCCTGGCGTCCGCTACAGGTGTATGCGGCGGCG
AACCGGGGCGCTACGCCGACGGCCAGCGCGCATGAGGCGTTCCTCACGGTCAGCCAGCCGGCCGAGCTGGAC
CGTCAGTTGGCTGCGGCCAAGGCCGAGGGACAATGGGTGCTGCTCGACTACTACGCTGACTGGTGCGTGTCC
TGCCGGATCATGGAGAAACAGGTGTTCGCCAAACCCGATGTGCTCGCCGCCCTGCAGGGCGTGCGCCTGCTG
CGGCTCGACGTGACCGCGGACAACGCCGCCAGCCGCGAGCTGCTGCGCCGCTACCAGGTACCCGGCCCGCCG
AGCCTGATCTGGATCGGTCCGGAAGGTGAGGAGCGCCGCGCGCGCCGGTTGACCGGCGAAGTCGACGCCGGC
GGCTTCCTCGCCCATTGGCAGGCGACCCGGGAGCGCGGCTGA
Translation:
MRVLILLLMFLLPGLSQAQPGDDLFAPRGATQTDFLPVEKAFRFTWERLDDGQVQLRWQIAPGYYLYQKRLR
FDGLDPALQPQLPPGESHSDEFFGESQVYRQSLELTLPAAAAGQLRLGWQGCADAGLCYPPQSQALDLGGTG
PAAAVAGTSGEVAEDQGLAGSLQAGNLAWSLLLFFGLGLLLAFAPCSLPMLPILAGLVVGSGARPRRGLLLA
GSYVLSMALVYAGLGVVAALLGGNLQAWLQQPWLLGSFAALFVFLALPMFGFFELQLPAALRDRLDGLSRGR
KGGSLAGAAALGALSGLLVGPCMTAPLAGALLYIAQTGNALHGGLVLFSLGLGIGMPLLLLVTVGSRFLPKP
GPWMNLVKGVFGFLFLGTAWILLRPLLGEALWIGLGGALLLVLAYAALHTARGLARHAVLFGAAGCIFGLWG
AAMLLGAAAGADDPWRPLQVYAAANRGATPTASAHEAFLTVSQPAELDRQLAAAKAEGQWVLLDYYADWCVS
CRIMEKQVFAKPDVLAALQGVRLLRLDVTADNAASRELLRRYQVPGPPSLIWIGPEGEERRARRLTGEVDAG
GFLAHWQATRERG*
AnnotationID:532GeneID:523
AnnotatorUID: danlee
Modification Date/Time: 2004-03-08 18:06:46
Gene Name:
Confidence Code:3
GeneProduct:probable thiol:disulfide interchange protein
Cell Localization:(4) Inner membrane protein
Synonyms:PA2478, dipZ2, dsbD2 
Cell Localization Confidence Code:2
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):Membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG4232, Thiol:disulfide interchange protein [Posttranslational modification, 
protein turnover, chaperones / Energy production and conversion]






   
Genomic Context:






   
Comment:


















    ReferenceID:1049




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18191




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:523
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
919
                           PA2478_tr
                           translation of PA2478
                           589
                           99.15
                           99.15
                           2
                           3008.0
     

     
     
37019
                           gb|AAG05866.1|AE004675_7
                           (AE004675) probable thiol:disulfide interchange protein [Pseudomonas aeruginosa PAO1]
                           589
                           99.15
                           99.15
                           2
                           3008.0
     

     
     
37021
                           gb|AAN69815.1|AE016620_1
                           (AE016789) thiol:disulfide interchange protein DsbD [Pseudomonas putida KT2440]
                           591
                           66.49
                           76.14
                           22
                           1957.0
     

     
     
37020
                           gb|AAF80267.1|AF155506_1
                           (AF155506) putative disulfide isomerase DsbD [Pseudomonas sp. JR1]
                           599
                           64.44
                           76.96
                           31
                           1990.0
     

     
     
37023
                           gb|AAN66188.1|AE016246_5
                           (AE016776) thiol:disulfide interchange protein DsbD [Pseudomonas putida KT2440]
                           616
                           44.96
                           57.79
                           53
                           1145.0
     

     






      

          
GC ORFID: 43525How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2478Glimmer Score: 

          
Start: 2124130Stop: 2122361

          
Length: 1770


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2478 translation of PA2478Homolog Bit Score 1162.0

          
Other Homologs:  t_PA4845 (ORF: BLASTX 411.0), t_PA2478 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGTGTGTTGATCCTGCTCCTGATGTTCCTGCTGCCGGGCCTGTCCCAGGCGCAACCGGGCGACGACCTG 
TTCGCGCCGCGCGGCGCGACGCAGACGGATTTCCTGCCGGTGGAGAAAGCCTTCCGCTTCACCTGGGAGCGC 
CTCGACGACGGCCAGGTGCAACTGCGCTGGCAGATCGCGCCGGGCTACTACCTGTACCAGAAGCGCCTGCGC 
TTCGACGGACTCGACCCGGCCTTGCAGCCGCAGCTGCCGCCGGGCGAAAGCCACAGCGACGAGTTCTTCGGC 
GAGTCGCAGGTCTATCGCCAGAGCCTGGAACTGACCCTGCCGGCGGCCGCCGCCGGACAACTGCGCCTGGGC 
TGGCAGGGCTGCGCTGACGCCGGCCTGTGCTATCCGCCGCAGAGCCAGGCGCTCGACCTGGGCGGTACCGGC 
CCTGCCGCCGCCGTCGCCGGGACGAGCGGCGAAGTCGCCGAGGACCAGGGCCTGGCCGGCAGCCTGCAGGCC 
GGCAACCTGGCCTGGAGCCTGTTGCTGTTCTTCGGCCTCGGCCTGTTGCTGGCGTTCGCTCCCTGTTCGCTG 
CCGATGCTGCCGATCCTCGCCGGGCTGGTGGTCGGCAGCGGCGCCCGCCCTCGTCGCGGCCTGTTGCTGGCC 
GGTAGCTACGTGCTGAGCATGGCGCTGGTCTACGCCGGACTCGGGGTGGTCGCGGCGCTGCTTGGCGGCAAC 
CTGCAGGCCTGGCTGCAACAGCCGTGGCTGCTGGGCAGCTTCGCCGCGCTGTTCGTGTTCCTCGCGCTGCCG 
ATGTTCGGCTTCTTCGAACTGCAACTGCCGGCGGCCCTGCGCGACCGCCTCGACGGTCTCAGTCGCGGCCGC 
AAGGGCGGCAGCCTGGCCGGCGCGGCCGCGCTCGGCGCGTTGTCCGGGCTGCTGGTGGGGCCGTGCATGACC 
GCGCCGCTGGCCGGCGCCTTGCTCTATATCGCGCAGACCGGCAATGCCCTGCATGGCGGCCTGGTGCTGTTC 
AGCCTGGGCCTCGGCATCGGCATGCCGCTGTTGCTGCTGGTGACGGTCGGCAGCCGCTTCCTGCCCAAGCCC 
GGTCCCTGGATGAACCTGGTCAAGGGCGTGTTCGGCTTCCTTTTCCTCGGCACCGCCTGGATACTCCTGCGT 
CCGCTGCTCGGCGAGGCGCTGTGGATCGGCCTTGGCGGCGCGTTGCTGCTGGTCCTGGCCTACGCCGCGCTG 
CACACGGCGCGAGGCCTGGCACGGCACGCGGTGCTGTTCGGCGCGGCGGGCTGCATCTTCGGTCTCTGGGGC 
GCGGCGATGCTGCTGGGCGCCGCGGCCGGGGCAGACGACCCCTGGCGTCCGCTACAGGTGTATGCGGCGGCG 
AACCGGGGCGCTACGCCGACGGCCAGCGCGCATGAGGCGTTCCTCACGGTCAGCCAGCCGGCCGAGCTGGAC 
CGTCAGTTGGCTGCGGCCAAGGCCGAGGGACAATGGGTGCTGCTCGACTACTACGCTGACTGGTGCGTGTCC 
TGCCGGATCATGGAGAAACAGGTGTTCGCCAAACCCGATGTGCTCGCCGCCCTGCAGGGCGTGCGCCTGCTG 
CGGCTCGACGTGACCGCGGACAACGCCGCCAGCCGCGAGCTGCTGCGCCGCTACCAGGTACCCGGCCCGCCG 
AGCCTGATCTGGATCGGTCCGGAAGGTGAGGAGCGCCGCGCGCGCCGGTTGACCGGCGAAGTCGACGCCGGC 
GGCTTCCTCGCCCATTGGCAGGCGACCCGGGAGCGCGGCTGA