ViewGene
Locus Name:
GeneID:
Location:

GeneID:5229
TrivialName: PA14_04750
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_04750
PAO1 Ortholog Locus:PA0362
Sequence Length:252
Protein Length:83
Start: 421250
Stop: 420999
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03751.1|AE004474_3 (AE004474) ferredoxin [4Fe-4S] [Pseudomonas aeruginosa PAO1]
Identities = 83/83 (100%), Positives = 83/83 (100%)
Sequence:
ATGTCCCTGAAAATCACTGACGATTGCATCAATTGCGACGTCTGCGAACCCGAATGCCCGAACGGCGCGATC
TCGCAAGGCGAAGAAATCTATGTGATCGATCCCAATCTCTGCACCGAGTGCGTCGGCCACTACGACGAGCCG
CAGTGCCAGCAGGTCTGTCCGGTGGACTGCATTCCCCTCGACGACGCCAATGTCGAGAGCAAGGACCAGTTG
ATGGAGAAATACCGGAAGATCACCGGCAAGGCCTGA
Translation:
MSLKITDDCINCDVCEPECPNGAISQGEEIYVIDPNLCTECVGHYDEPQCQQVCPVDCIPLDDANVESKDQL
MEKYRKITGKA*
AnnotationID:5234GeneID:5229
AnnotatorUID: diggins
Modification Date/Time: 2004-08-08 19:07:15
Gene Name:fdx1
Confidence Code:2
GeneProduct:ferredoxin [4Fe-4S]
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70689.1|AE016712_7 (AE016793) ferredoxin, 4Fe-4S [Pseudomonas putida KT2440]
          Length = 83

 Score =  161 bits (408), Expect = 7e-40
 Identities = 71/82 (86%), Positives = 78/82 (95%)

>gb|AAO53960.1| (AE016857) ferredoxin [Pseudomonas syringae pv. tomato str.
          DC3000]
          Length = 83

 Score =  158 bits (400), Expect = 6e-39
 Identities = 71/80 (88%), Positives = 76/80 (95%)

>gb|AAF40582.1| (AE002371) ferredoxin, 4Fe-4S bacterial type [Neisseria
          meningitidis MC58]
          Length = 83

 Score =  142 bits (358), Expect = 4e-34
 Identities = 62/79 (78%), Positives = 70/79 (88%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10458




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27603




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33699




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5229_cdd.html


    		




 
URL:

















    ReferenceID:35404




  
Author/Investigator(s):
        Armengaud J, Timmis KN.





  
Title:
        Molecular characterization of Fdx1, a putidaredoxin-type [2Fe-2S] ferredoxin able to transfer electrons to the dioxin dioxygenase of Sphingomonas sp. RW1.




  
PubMed:
        9288905


MedLine:
        




    
Source:
Eur J Biochem. 1997 Aug 1;247(3):833-42.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9288905

















    ReferenceID:35405




  
Author/Investigator(s):
        Seo D, Tomioka A, Kusumoto N, Kamo M, Enami I, Sakurai H.





  
Title:
        Purification of ferredoxins and their reaction with purified reaction center complex from the green sulfur bacterium Chlorobium tepidum.




  
PubMed:
        11115649


MedLine:
        




    
Source:
Biochim Biophys Acta. 2001 Jan 19;1503(3):377-84.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11115649









           
Homologs By Global Alignment 

           

       



     
Gene ID:5229
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7637
                           PA0362_tr
                           translation of PA0362
                           83
                           99.99
                           99.99
                           0
                           466.0
     

     
     
195162
                           gb|AAG03751.1|AE004474_3
                           (AE004474) ferredoxin [4Fe-4S] [Pseudomonas aeruginosa PAO1]
                           83
                           99.99
                           99.99
                           0
                           466.0
     

     
     
195163
                           gb|AAN70689.1|AE016712_7
                           (AE016793) ferredoxin, 4Fe-4S [Pseudomonas putida KT2440]
                           83
                           85.54
                           93.97
                           0
                           408.0
     

     
     
195164
                           gb|AAO53960.1|
                           (AE016857) ferredoxin [Pseudomonas syringae pv. tomato str. DC3000]
                           83
                           85.54
                           91.56
                           0
                           400.0
     

     
     
195165
                           gb|AAQ61861.1|
                           (AE016924) ferredoxin [4Fe-4S [Chromobacterium violaceum ATCC 12472]
                           83
                           79.51
                           91.56
                           0
                           384.0
     

     






      

          
GC ORFID: 48231How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0362Glimmer Score: 

          
Start: 6222592Stop: 6222341

          
Length: 252


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0362 translation of PA0362Homolog Bit Score 184.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6825 (ORF: BLASTX 162.0), t_PA0362 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCCTGAAAATCACTGACGATTGCATCAATTGCGACGTCTGCGAACCCGAATGCCCGAACGGCGCGATC 
TCGCAAGGCGAAGAAATCTATGTGATCGATCCCAATCTCTGCACCGAGTGCGTCGGCCACTACGACGAGCCG 
CAGTGCCAGCAGGTCTGTCCGGTGGACTGCATTCCCCTCGACGACGCCAATGTCGAGAGCAAGGACCAGTTG 
ATGGAGAAATACCGGAAGATCACCGGCAAGGCCTGA