ViewGene
Locus Name:
GeneID:
Location:

GeneID:5228
TrivialName: PA14_11880
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_11880
PAO1 Ortholog Locus:PA4018
Sequence Length:276
Protein Length:91
Start: 1028401
Stop: 1028676
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07405.1|AE004818_11 (AE004818) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 89/91 (97%), Positives = 90/91 (98%)
Sequence:
GTGCTGCTACTGGTCCTGGCGGTGCAGTTGGGCGGTTGCGCCACCGTGCGCACCCTGGATGCGGCCAAGCCA
GGGGCGCCGGTGGTCTACGCCGGCACCCGGCTGGACTGGTACAGCCTGCACGGCGGCTGCTGCCCGATGGAA
CGCTTCGGCGCGGAGGCGCCGGCCCATCCGGGGCTCGACCTGCCGGGCAGCGCGCTGCTGGACACCCTGTTG
CTGCCGTTCTCGCTGGCCACCGCCATCGGCCTCAACCTCGGCGTCAGCGGCGGCATGTAG
Translation:
MLLLVLAVQLGGCATVRTLDAAKPGAPVVYAGTRLDWYSLHGGCCPMERFGAEAPAHPGLDLPGSALLDTLL
LPFSLATAIGLNLGVSGGM*
AnnotationID:5233GeneID:5228
AnnotatorUID: urbach
Modification Date/Time: 2004-09-14 12:12:59
Gene Name:
Confidence Code:4
GeneProduct:putative lipoprotein
Cell Localization:(8) Periplasmic
Synonyms:PA4018
Cell Localization Confidence Code:4
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG5645,pfam07119
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
gnl|CDD|14729 COG5645, COG5645, Predicted periplasmic lipoprotein [General function prediction only]
Length = 80
Score = 79.2 bits (195), Expect = 1e-16
Identities = 33/86 (38%), Positives = 40/86 (46%), Gaps = 11/86 (12%)






   
Genomic Context:






   
Comment:


















    ReferenceID:15282




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27601




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5228
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7636
                           PA4018_tr
                           translation of PA4018
                           91
                           97.80
                           98.90
                           0
                           467.0
     

     
     
195159
                           gb|AAG07405.1|AE004818_11
                           (AE004818) hypothetical protein PA4018 [Pseudomonas aeruginosa PAO1]
                           91
                           96.70
                           98.90
                           0
                           464.0
     

     
     
195161
                           gb|AAN66176.1|AE016245_5
                           (AE016776) lipoprotein, putative [Pseudomonas putida KT2440]
                           95
                           65.26
                           75.78
                           4
                           325.0
     

     
     
195160
                           gb|AAO54273.1|
                           (AE016858) lipoprotein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           98
                           64.28
                           77.55
                           7
                           336.0
     

     






      

          
GC ORFID: 48230How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4018Glimmer Score: 

          
Start: 3925537Stop: 3925262

          
Length: 276


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA4018 translation of PA4018Homolog Bit Score 184.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3475 (ORF: BLASTX 136.0), t_PA4018 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGCTGCTACTGGTCCTGGCGGTGCAGTTGGGCGGTTGCGCCACCGTGCGCACCCTGGATGCGGCCAAGCCA 
GGGGCGCCGGTGGTCTACGCCGGCACCCGGCTGGACTGGTACAGCCTGCACGGCGGCTGCTGCCCGATGGAA 
CGCTTCGGCGCGGAGGCGCCGGCCCATCCGGGGCTCGACCTGCCGGGCAGCGCGCTGCTGGACACCCTGTTG 
CTGCCGTTCTCGCTGGCCACCGCCATCGGCCTCAACCTCGGCGTCAGCGGCGGCATGTAG