ViewGene
Locus Name:
GeneID:
Location:

GeneID:5227
TrivialName: PA14_17700
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_17700
PAO1 Ortholog Locus:PA3601
Sequence Length:264
Protein Length:87
Start: 1521988
Stop: 1522251
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06989.1|AE004780_8 (AE004780) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 87/87 (100%), Positives = 87/87 (100%)
Sequence:
ATGAAACCCGGCATCCATCCCGAATACCGTCCCGTCCTGTTCCATGACACCTCGGCCGACGTGTACTTCCTG
ATCGGCTCCACCGCGGAGACCGACAAGACCCATACCCATACCGACGGCAAGACCTATCCCTACGTGACGCTG
GACGTTTCCAGCGCCTCGCACCCGGTCTACACCGGCGAACAGCGCAAGACCAAGAGCGAAGGCCGCGTGGCC
GGGTTCAACAAGCGTTTCGCCGGCTTCGTCGGCGGCAAGGGGGCCTGA
Translation:
MKPGIHPEYRPVLFHDTSADVYFLIGSTAETDKTHTHTDGKTYPYVTLDVSSASHPVYTGEQRKTKSEGRVA
GFNKRFAGFVGGKGA*
AnnotationID:5232GeneID:5227
AnnotatorUID: diggins
Modification Date/Time: 2005-04-20 12:12:36
Gene Name:
Confidence Code:3
GeneProduct:putative ribosomal protein, L31P family
Cell Localization:()
Synonyms:rpmE
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:putative ribosomal protein
Functional Category Confidence Code:5
COGs:COG0254,pfam01197
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57639.1| (AE016871) ribosomal protein L31 [Pseudomonas syringae pv. tomato
          str. DC3000]
          Length = 93

 Score =  140 bits (354), Expect = 1e-33
 Identities = 64/84 (76%), Positives = 71/84 (84%)

>gb|AAF94040.1| (AE004172) ribosomal protein, L31P family [Vibrio cholerae]
          Length = 85

 Score =  109 bits (272), Expect = 4e-24
 Identities = 49/81 (60%), Positives = 63/81 (77%), Gaps = 1/81 (1%)

>gb|AAN78888.1|AE016756_71 (AE016756) 50S ribosomal protein L31 type B-1 [Escherichia coli
          CFT073]
          Length = 88

 Score =  108 bits (271), Expect = 5e-24
 Identities = 54/85 (63%), Positives = 60/85 (70%), Gaps = 1/85 (1%)










 
Structural Features:
COG0254, RpmE, Ribosomal protein L31 
[Translation, ribosomal structure and biogenesis]
CD-Length = 75 residues, 100.0% aligned
Score = 87.6 bits (217), Expect = 5e-19
Identities = 40/87 (45%), Positives = 46/87 (52%), Gaps = 13/87 (14%)

pfam01197, Ribosomal_L31, Ribosomal protein L31.
CD-Length = 68 residues,  95.6% aligned
Score = 58.8 bits (142), Expect = 2e-10
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 13/78 (16%)






   
Genomic Context:






   
Comment:
other possble gene name: ykgM


















    ReferenceID:10454




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27599




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31940




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5227_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5227
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7635
                           PA3601_tr
                           translation of PA3601
                           87
                           99.99
                           99.99
                           0
                           467.0
     

     
     
195139
                           gb|AAG06989.1|AE004780_8
                           (AE004780) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           87
                           99.99
                           99.99
                           0
                           467.0
     

     
     
195140
                           gb|AAO57639.1|
                           (AE016871) ribosomal protein L31 [Pseudomonas syringae pv. tomato str. DC3000]
                           95
                           68.42
                           76.84
                           10
                           353.0
     

     
     
195141
                           dbj|BAC60594.1|
                           (AP005081) ribosomal protein, L31P family [Vibrio parahaemolyticus]
                           87
                           64.36
                           78.16
                           1
                           314.0
     

     
     
195151
                           gb|AAC73399.1|
                           (AE000137) putative ribosomal protein [Escherichia coli K12]
                           88
                           63.63
                           70.45
                           2
                           273.0
     

     






      

          
GC ORFID: 48229How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3601Glimmer Score: 

          
Start: 3431948Stop: 3431685

          
Length: 264


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3601 translation of PA3601Homolog Bit Score 184.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6251 (ORF: BLASTX 138.0), t_PA3601 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAACCCGGCATCCATCCCGAATACCGTCCCGTCCTGTTCCATGACACCTCGGCCGACGTGTACTTCCTG 
ATCGGCTCCACCGCGGAGACCGACAAGACCCATACCCATACCGACGGCAAGACCTATCCCTACGTGACGCTG 
GACGTTTCCAGCGCCTCGCACCCGGTCTACACCGGCGAACAGCGCAAGACCAAGAGCGAAGGCCGCGTGGCC 
GGGTTCAACAAGCGTTTCGCCGGCTTCGTCGGCGGCAAGGGGGCCTGA