ViewGene
Locus Name:
GeneID:
Location:

GeneID:5226
TrivialName: PA14_42540
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_42540
PAO1 Ortholog Locus:PA1699
Sequence Length:279
Protein Length:92
Start: 3786729
Stop: 3786451
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05088.1|AE004597_2 (AE004597) conserved hypothetical protein in type III secretion [Pseudomonas aeruginosa PAO1]
Identities = 92/92 (100%), Positives = 92/92 (100%)
Sequence:
ATGGCATACGGGCCTTCTGAATTGACCGGCGCAGTCATCGCCTTGCTCGAGAAGCGCTGGGTCGGCGTCGCC
GAGGTGCAGGCGTTGCTCGAGCCGTTGCCGCTGGCCGACGTCGCCCGGCAGATCCATTTCTTCCGCGAACTG
AAGCGTCTCTACCGCCTGTTGCCGGTCGAAGTGTTCGGCGACGACGAGCAGCGCCAGAATCTTTTGAATGCC
TGCCAGATGGCACTCGACCTGGCGATCGAGCGCGAAGAGGAGCAGCAGCATGGACTGGGTTGA
Translation:
MAYGPSELTGAVIALLEKRWVGVAEVQALLEPLPLADVARQIHFFRELKRLYRLLPVEVFGDDEQRQNLLNA
CQMALDLAIEREEEQQHGLG*
AnnotationID:5231GeneID:5226
AnnotatorUID: diggins
Modification Date/Time: 2005-02-28 06:06:41
Gene Name:
Confidence Code:3
GeneProduct:putative protein in type III secretion
Cell Localization:()
Synonyms:pcr1
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAD30214.1| (AJ458292) Acr1 protein [Aeromonas salmonicida subsp.
          salmonicida]
          Length = 93

 Score =  103 bits (257), Expect = 2e-22
 Identities = 51/90 (56%), Positives = 67/90 (74%)

>gb|AAC69793.1| (AF074612) Yop secretion and targeting control protein [Yersinia
          pestis KIM]
          Length = 92

 Score = 92.0 bits (227), Expect = 6e-19
 Identities = 41/87 (47%), Positives = 61/87 (70%)






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:10452




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27597




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5226
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7634
                           PA1699_tr
                           translation of PA1699
                           92
                           99.99
                           99.99
                           0
                           466.0
     

     
     
195134
                           gb|AAG05088.1|AE004597_2
                           (AE004597) conserved hypothetical protein in type III secretion [Pseudomonas aeruginosa PAO1]
                           92
                           99.99
                           99.99
                           0
                           466.0
     

     
     
195135
                           gb|AAC45940.1|
                           (AF010150) Pcr1 [Pseudomonas aeruginosa]
                           92
                           99.99
                           99.99
                           0
                           466.0
     

     
     
195136
                           emb|CAE16137.1|
                           (BX571871) unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1]
                           95
                           63.15
                           75.78
                           3
                           296.0
     

     
     
195137
                           gb|AAO18046.1|
                           (AY144116) LssA [Photorhabdus luminescens]
                           95
                           62.10
                           75.78
                           3
                           295.0
     

     






      

          
GC ORFID: 48228How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1699Glimmer Score: 

          
Start: 1167180Stop: 1167458

          
Length: 279


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1699 translation of PA1699Homolog Bit Score 184.0

          
Other Homologs:  t_PA1699 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCATACGGGCCTTCTGAATTGACCGGCGCAGTCATCGCCTTGCTCGAGAAGCGCTGGGTCGGCGTCGCC 
GAGGTGCAGGCGTTGCTCGAGCCGTTGCCGCTGGCCGACGTCGCCCGGCAGATCCATTTCTTCCGCGAACTG 
AAGCGTCTCTACCGCCTGTTGCCGGTCGAAGTGTTCGGCGACGACGAGCAGCGCCAGAATCTTTTGAATGCC 
TGCCAGATGGCACTCGACCTGGCGATCGAGCGCGAAGAGGAGCAGCAGCATGGACTGGGTTGA