ViewGene
Locus Name:
GeneID:
Location:

GeneID:5224
TrivialName: PA14_61110
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_61110
PAO1 Ortholog Locus:
Sequence Length:579
Protein Length:192
Start: 5449142
Stop: 5448564
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAN68095.1|AE016441_7 (AE016783) conserved hypothetical protein [Pseudomonas putida KT2440]
Identities = 98/182 (53%), Positives = 126/182 (69%)
Sequence:
CTGATGGTCGCCGCCGACGAGGTGCTGTGCCTGGTCCTGGCGGCCGGGCAGGGGCGCCGCTTCGGCAGCGAC
AAGCGCCTGGCGCGGCTGGCTGATGGCACGACCCTGCTGGCGGCCAGCGTGGCGCGGGCGCGCGAGGCGTTC
GCCGAGGTGCGGGTGGTGGTGCGTGCCGGAGAGACCCCGGCGAGCCTGGGCCTGCCGGCGCAACAGCGGCTT
GTCCACAGCCTCGACGCCTCGTCGGGCATGGGCCACAGCCTGGCCGCCGGCGTCGCGGCGGCGAGGAACAGC
CCGGCCCGGGCCATCGCCGTCCTGCTCGGCGACATGCCCTGGATCGCCGCCGATACCCTCGAGCGTCTGGCC
GCGATGGCCACTCCCGAAGCCATCGTGTTTCCCCTGTACGACGGCCAGCGCGGTCATCCGGTGCTGTTCGGC
CGCGCTTTCTGGGACGCGCTTGCACAACTGGACGGCGACCAGGGCGCGCGCCGCGTGCTGCTGGCCCATCGT
CCGGCCTGGCGCGAGGTACCGTGCGACGATCCGGGCGTACTCCGCGACGTGGACACCCCGGCGGCGCTCGGC
TGA
Translation:
MMVAADEVLCLVLAAGQGRRFGSDKRLARLADGTTLLAASVARAREAFAEVRVVVRAGETPASLGLPAQQRL
VHSLDASSGMGHSLAAGVAAARNSPARAIAVLLGDMPWIAADTLERLAAMATPEAIVFPLYDGQRGHPVLFG
RAFWDALAQLDGDQGARRVLLAHRPAWREVPCDDPGVLRDVDTPAALG*
AnnotationID:5229GeneID:5224
AnnotatorUID: danlee
Modification Date/Time: 2006-06-01 23:11:03
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2068,COG0746
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|84323349|ref|ZP_00971422.1|  COG2068: Uncharacterized MobA-related protein [Pseudomonas aeruginosa 
2192]
Length=191

 Score =  300 bits (767),  Expect = 3e-80
 Identities = 191/191 (100%), Positives = 191/191 (100%), Gaps = 0/191 (0%)

gi|94415669|ref|ZP_01295506.1|  hypothetical protein PaerP_01002636 [Pseudomonas aeruginosa PA7]
Length=191

 Score =  290 bits (743),  Expect = 2e-77
 Identities = 185/191 (96%), Positives = 187/191 (97%), Gaps = 0/191 (0%)

gi|84317222|ref|ZP_00965674.1|  COG2068: Uncharacterized MobA-related protein [Pseudomonas aeruginosa 
C3719]
Length=191

 Score =  289 bits (739),  Expect = 5e-77
 Identities = 185/191 (96%), Positives = 186/191 (97%), Gaps = 0/191 (0%)








 
Structural Features:
COG2068, Uncharacterized MobA-related protein 
CD-Length = 199 residues,  93.0% aligned
Score =  113 bits (283), Expect = 4e-26
Identities = 75/188 (39%), Positives = 98/188 (52%), Gaps = 7/188 (3%)

COG0746, MobA, Molybdopterin-guanine dinucleotide biosynthesis protein A 
[Coenzyme metabolism]
CD-Length = 192 residues,  93.2% aligned
Score = 53.8 bits (129), Expect = 2e-08
Identities = 55/188 (29%), Positives = 78/188 (41%), Gaps = 15/188 (7%)







   
Genomic Context:






   
Comment:


















    ReferenceID:15280




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27593




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31605




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5224_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5224
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
195126
                           gb|AAN69811.1|AE016619_9
                           (AE016789) conserved hypothetical protein [Pseudomonas putida KT2440]
                           193
                           50.77
                           66.32
                           6
                           460.0
     

     
     
195125
                           gb|AAN68095.1|AE016441_7
                           (AE016783) conserved hypothetical protein [Pseudomonas putida KT2440]
                           200
                           50.00
                           64.00
                           9
                           467.0
     

     
     
195127
                           gb|AAO56160.1|
                           (AE016865) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           205
                           46.82
                           60.48
                           21
                           467.0
     

     
     
195128
                           emb|CAE44905.1|
                           (BX640412) conserved hypothetical protein [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           216
                           43.98
                           51.38
                           41
                           370.0
     

     
     
195129
                           emb|CAE30768.1|
                           (BX640437) conserved hypothetical protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           225
                           43.11
                           49.77
                           42
                           354.0
     

     






      

          
GC ORFID: 48226How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: psyr_15may02_Scaffold7_revised_gene6966Glimmer Score: 

          
Start: 4712822Stop: 4712244

          
Length: 579


          
Start Codon: CTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: psyr_15may02_Scaffold7_revised_gene6966 related to: gi|16124275|ref|NP_418839.1| (NC_002696) conserved hypothetical protein [Caulobacter crescentus] gb|AAK22007.1| (AE005676) conserved hypothetical protein [Caulobacter crescentus] [Caulobacter vibrioides]Homolog Bit Score 185.0

          
Other Homologs:  psyr_15may02_Scaffold7_revised_gene6966 (ORF: GLIMMER)

          
GC ORF Sequence

           
CTGATGGTCGCCGCCGACGAGGTGCTGTGCCTGGTCCTGGCGGCCGGGCAGGGGCGCCGCTTCGGCAGCGAC 
AAGCGCCTGGCGCGGCTGGCTGATGGCACGACCCTGCTGGCGGCCAGCGTGGCGCGGGCGCGCGAGGCGTTC 
GCCGAGGTGCGGGTGGTGGTGCGTGCCGGAGAGACCCCGGCGAGCCTGGGCCTGCCGGCGCAACAGCGGCTT 
GTCCACAGCCTCGACGCCTCGTCGGGCATGGGCCACAGCCTGGCCGCCGGCGTCGCGGCGGCGAGGAACAGC 
CCGGCCCGGGCCATCGCCGTCCTGCTCGGCGACATGCCCTGGATCGCCGCCGATACCCTCGAGCGTCTGGCC 
GCGATGGCCACTCCCGAAGCCATCGTGTTTCCCCTGTACGACGGCCAGCGCGGTCATCCGGTGCTGTTCGGC 
CGCGCTTTCTGGGACGCGCTTGCACAACTGGACGGCGACCAGGGCGCGCGCCGCGTGCTGCTGGCCCATCGT 
CCGGCCTGGCGCGAGGTACCGTGCGACGATCCGGGCGTACTCCGCGACGTGGACACCCCGGCGGCGCTCGGC 
TGA