ViewGene

Locus Name:
GeneID:
Location:

GeneID:5223
TrivialName: PA14_21380
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_21380
PAO1 Ortholog Locus:PA3298
Sequence Length:303
Protein Length:100
Start: 1851742
Stop: 1852044
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06686.1|AE004752_2 (AE004752) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 93/100 (93%), Positives = 95/100 (95%)
Sequence:
ATGCGGGGCTTCTTCGTTGCTGGCAGTCGGTTGCGGGGTGAGCGGGCCTGTGCGGACGTGCCTGCAGCGCAT
CACCTGCCGGAGGAAACCCCCATGGCCCGCCTCGATCCTGCCCTGGCCGAAGAAATACGCCGTCTGCCGATC
AGCCGGTGTCTGGAACTGATCCAGGCATTGCTGCATCGCGCCGGCCCCGAGGTGGAGCGCCAATGGCTGCGA
GTGGCCGAGGATCGCCTCGCCGACTGCCGGGCGGGCACCGCCGATGCGCTGCCGTTGGCCGAGGTGCTCAAG
CGACTGGGGCGCTGA
Translation:
MRGFFVAGSRLRGERACADVPAAHHLPEETPMARLDPALAEEIRRLPISRCLELIQALLHRAGPEVERQWLR
VAEDRLADCRAGTADALPLAEVLKRLGR*
AnnotationID:5228GeneID:5223
AnnotatorUID: diggins
Modification Date/Time: 2005-04-15 07:07:17
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA3298
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:10446
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27591
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32255
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:5223_cdd.html
URL:
Homologs By Global Alignment
Gene ID:5223

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7633 PA3298_tr translation of PA3298 100 93.00 95.00 0 469.0
195124 gb|AAG06686.1|AE004752_2 (AE004752) hypothetical protein PA3298 [Pseudomonas aeruginosa PAO1] 100 93.00 95.00 0 469.0
GC ORFID: 48225How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3298Glimmer Score:
Start: 3102189Stop: 3101887
Length: 303
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3298 translation of PA3298Homolog Bit Score 185.0
Other Homologs: t_PA3298 (ORF: GLIMMER)
GC ORF Sequence
ATGCGGGGCTTCTTCGTTGCTGGCAGTCGGTTGCGGGGTGAGCGGGCCTGTGCGGACGTGCCTGCAGCGCAT
CACCTGCCGGAGGAAACCCCCATGGCCCGCCTCGATCCTGCCCTGGCCGAAGAAATACGCCGTCTGCCGATC
AGCCGGTGTCTGGAACTGATCCAGGCATTGCTGCATCGCGCCGGCCCCGAGGTGGAGCGCCAATGGCTGCGA
GTGGCCGAGGATCGCCTCGCCGACTGCCGGGCGGGCACCGCCGATGCGCTGCCGTTGGCCGAGGTGCTCAAG
CGACTGGGGCGCTGA