ViewGene
Locus Name:
GeneID:
Location:

GeneID:5221
TrivialName: PA14_55840
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_55840
PAO1 Ortholog Locus:PA4298
Sequence Length:285
Protein Length:94
Start: 4986809
Stop: 4986525
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07686.1|AE004846_3 (AE004846) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 93/94 (98%), Positives = 93/94 (98%)
Sequence:
ATGCACGAGCGAATCCTGTTCGGCGTCTTGCTGCTCCTGTCCGGCCCGGCCTGGGCCGCGGACACGCCGGCG
GTCCGTCCCGCCGCGCCAGCGACGGCCGAACCGCAGACCGCCACCCGCGCCTGGCTGGCCATCCAGGCGAGC
GGCCGGGCCGCCAGCCCGGTTCGGCAAAGCGCGACCGCCGCCGAGCGCCAGCGGGCCTACCAGCGCTACCTG
AAAAGCTATGAGCACGAGATTCCCGAGTACCTGCTGGAAGATCGTGGCTTCGGCGAGAGCAAGAACTGA
Translation:
MHERILFGVLLLLSGPAWAADTPAVRPAAPATAEPQTATRAWLAIQASGRAASPVRQSATAAERQRAYQRYL
KSYEHEIPEYLLEDRGFGESKN*
AnnotationID:5226GeneID:5221
AnnotatorUID: diggins
Modification Date/Time: 2005-04-04 07:07:30
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4298
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:10442




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27587




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5221
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7632
                           PA4298_tr
                           translation of PA4298
                           94
                           98.93
                           98.93
                           0
                           473.0
     

     
     
195122
                           gb|AAG07686.1|AE004846_3
                           (AE004846) hypothetical protein PA4298 [Pseudomonas aeruginosa PAO1]
                           94
                           98.93
                           98.93
                           0
                           473.0
     

     






      

          
GC ORFID: 48223How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4298Glimmer Score: 

          
Start: 4250485Stop: 4250201

          
Length: 285


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4298 translation of PA4298Homolog Bit Score 186.0

          
Other Homologs:  t_PA4298 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCACGAGCGAATCCTGTTCGGCGTCTTGCTGCTCCTGTCCGGCCCGGCCTGGGCCGCGGACACGCCGGCG 
GTCCGTCCCGCCGCGCCAGCGACGGCCGAACCGCAGACCGCCACCCGCGCCTGGCTGGCCATCCAGGCGAGC 
GGCCGGGCCGCCAGCCCGGTTCGGCAAAGCGCGACCGCCGCCGAGCGCCAGCGGGCCTACCAGCGCTACCTG 
AAAAGCTATGAGCACGAGATTCCCGAGTACCTGCTGGAAGATCGTGGCTTCGGCGAGAGCAAGAACTGA