ViewGene
Locus Name:
GeneID:
Location:

GeneID:5219
TrivialName: PA14_17330
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_17330
PAO1 Ortholog Locus:PA3634
Sequence Length:285
Protein Length:94
Start: 1489398
Stop: 1489682
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07022.1|AE004783_7 (AE004783) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 94/94 (100%), Positives = 94/94 (100%)
Sequence:
TTGAGGTTACGTAGCCCCTACTGGCTGTTCGTGGTGCTGATCCTGGCGCTGGCGGGCCTGCAATATCGCCTG
TGGGTCGGCGATGGCAGCCTGGCGCAGGTACGCGACCTGCAGAAGCAGATCGCCGACCAGCATGGCGAGAAC
GAGCGCCTGCTGGAGCGCAACCGGATTCTTGAAGCCGAAGTCGCCGAGTTGAAGAAAGGCACCGAGACCGTC
GAGGAGCGTGCGCGGCACGAGCTTGGCATGGTCAAGGACGGCGAAACCCTCTACCAGCTCGCCAAGTGA
Translation:
MRLRSPYWLFVVLILALAGLQYRLWVGDGSLAQVRDLQKQIADQHGENERLLERNRILEAEVAELKKGTETV
EERARHELGMVKDGETLYQLAK*
AnnotationID:5224GeneID:5219
AnnotatorUID: diggins
Modification Date/Time: 2005-04-20 20:08:35
Gene Name:
Confidence Code:3
GeneProduct:putative septum formation initiator
Cell Localization:()
Synonyms:PA3634
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(6) Cell division
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2919,pfam04977
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG2919, Septum formation initiator 
[Cell division and chromosome partitioning]
CD-Length = 117 residues,  80.3% aligned
Score = 84.6 bits (209), Expect = 3e-18
Identities = 45/94 (47%), Positives = 56/94 (59%)

pfam04977, DivIC, Septum formation initiator.
CD-Length = 90 residues,  98.9% aligned
Score = 84.1 bits (208), Expect = 5e-18
Identities = 45/89 (50%), Positives = 55/89 (61%)






   
Genomic Context:






   
Comment:


















    ReferenceID:15278




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27583




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31909




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5219_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5219
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7630
                           PA3634_tr
                           translation of PA3634
                           94
                           99.99
                           99.99
                           0
                           473.0
     

     
     
195118
                           gb|AAG07022.1|AE004783_7
                           (AE004783) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           94
                           98.93
                           99.99
                           0
                           471.0
     

     
     
195119
                           gb|AAN67234.1|AE016350_7
                           (AE016780) conserved hypothetical protein [Pseudomonas putida KT2440]
                           95
                           76.84
                           89.47
                           3
                           387.0
     

     
     
195120
                           gb|AAO55075.1|
                           (AE016861) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           94
                           76.59
                           88.29
                           2
                           375.0
     

     






      

          
GC ORFID: 48221How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3634Glimmer Score: 

          
Start: 3464539Stop: 3464255

          
Length: 285


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3634 translation of PA3634Homolog Bit Score 186.0

          
Other Homologs:  t_PA3634 (ORF: GLIMMER)

          
GC ORF Sequence

           
TTGAGGTTACGTAGCCCCTACTGGCTGTTCGTGGTGCTGATCCTGGCGCTGGCGGGCCTGCAATATCGCCTG 
TGGGTCGGCGATGGCAGCCTGGCGCAGGTACGCGACCTGCAGAAGCAGATCGCCGACCAGCATGGCGAGAAC 
GAGCGCCTGCTGGAGCGCAACCGGATTCTTGAAGCCGAAGTCGCCGAGTTGAAGAAAGGCACCGAGACCGTC 
GAGGAGCGTGCGCGGCACGAGCTTGGCATGGTCAAGGACGGCGAAACCCTCTACCAGCTCGCCAAGTGA