ViewGene

Locus Name:
GeneID:
Location:

GeneID:5217
TrivialName: PA14_28600
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_28600
PAO1 Ortholog Locus:PA2747
Sequence Length:288
Protein Length:95
Start: 2464714
Stop: 2465001
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06135.1|AE004703_1 (AE004703) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 95/95 (100%), Positives = 95/95 (100%)
Sequence:
ATGGAAAAGTCCATCAAGATGCTGTTCGATGCCTTCCAGGCCACCTTTGCCGTATCCACCCAGATGCGTCCG
GACGGCGGCGCCCTGCTGACCCTGCGCAACGGCGAAGAGATCGTGACCCGTCGCGTGGTGTCCGCCGCCCAG
TTGGCCGACGAGAAGCGCATGTACTGGTTCATCAACGCCGTGCGCCGCGACCTGGCCCTGGAGGCAGGGAGC
CTGCCGGTGGATGTGGTCGGTACCCTGCGTCGTTTGCAGGAGCGCGGCCTGCCGAGCTACATGGCGGGCTGA
Translation:
MEKSIKMLFDAFQATFAVSTQMRPDGGALLTLRNGEEIVTRRVVSAAQLADEKRMYWFINAVRRDLALEAGS
LPVDVVGTLRRLQERGLPSYMAG*
AnnotationID:5222GeneID:5217
AnnotatorUID: diggins
Modification Date/Time: 2005-04-05 08:08:34
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2747
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:10434
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27579
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:5217

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7628 PA2747_tr translation of PA2747 95 99.99 99.99 0 471.0
195116 gb|AAG06135.1|AE004703_1 (AE004703) hypothetical protein PA2747 [Pseudomonas aeruginosa PAO1] 95 99.99 99.99 0 471.0
GC ORFID: 48219How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2747Glimmer Score:
Start: 2489212Stop: 2488925
Length: 288
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2747 translation of PA2747Homolog Bit Score 186.0
Other Homologs: t_PA2747 (ORF: GLIMMER)
GC ORF Sequence
ATGGAAAAGTCCATCAAGATGCTGTTCGATGCCTTCCAGGCCACCTTTGCCGTATCCACCCAGATGCGTCCG
GACGGCGGCGCCCTGCTGACCCTGCGCAACGGCGAAGAGATCGTGACCCGTCGCGTGGTGTCCGCCGCCCAG
TTGGCCGACGAGAAGCGCATGTACTGGTTCATCAACGCCGTGCGCCGCGACCTGGCCCTGGAGGCAGGGAGC
CTGCCGGTGGATGTGGTCGGTACCCTGCGTCGTTTGCAGGAGCGCGGCCTGCCGAGCTACATGGCGGGCTGA