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Modification Date/Time: | 2006-04-06 13:01:23 |
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Missense Discrepancy: | FALSE |
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Comments: Homology: gb|AAG06010.1|AE004691_1 (AE004691) cold-shock protein CspD [Pseudomonas aeruginosa PAO1]
Identities = 90/90 (100%), Positives = 90/90 (100%)
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Sequence:
ATGCTCAGCGGTAAGGTCAAGTGGTTCAACAACGCCAAGGGCTACGGGTTCATCCTGGCCGAGGGCCGAGAT
GAGGACCTGTTCGCCCATTACTCGGCCATTCAGATGGACGGTTACAAGACACTCAAGGCGGGCCAGCCGGTC
AATTTCGAGATCATCCAGGGACCGAAGGGACTGCATGCCATCAACATCAGCCCCGCCACCGCGACAACCGCC
GCACCCTCCGCCCCCGCCCCGCAGGAAGAGCCGCAGGCGACGCCCATCGAAGCCTGA |
Translation:
MLSGKVKWFNNAKGYGFILAEGRDEDLFAHYSAIQMDGYKTLKAGQPVNFEIIQGPKGLHAINISPATATTA
APSAPAPQEEPQATPIEA* |
AnnotationID:5220 | GeneID:5215 |
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Modification Date/Time: |
2005-03-07 13:01:57 |
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GeneProduct: | cold-shock protein CspD |
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Cell Localization Confidence Code: | 5 |
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Functional Category: | (25) Transcriptional regulators |
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Alternate Gene Product Name: | |
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Functional Category Confidence Code: | 5 |
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Secondary Functional Category(ies): | adaptation, protection |
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Homology: | >gb|AAO56833.1| (AE016868) cold shock domain family protein [Pseudomonas syringae
pv. tomato str. DC3000]
Length = 89
Score = 127 bits (319), Expect = 1e-29
Identities = 62/85 (72%), Positives = 68/85 (80%), Gaps = 1/85 (1%)
>gb|AAN69604.1|AE016594_1 (AE016788) cold-shock protein CspD [Pseudomonas putida KT2440]
Length = 88
Score = 119 bits (299), Expect = 3e-27
Identities = 61/90 (67%), Positives = 67/90 (74%), Gaps = 2/90 (2%)
>gb|AAN55657.1|AE015704_8 (AE015704) stress response protein CspD [Shewanella oneidensis
MR-1]
Length = 68
Score = 102 bits (254), Expect = 5e-22
Identities = 46/66 (69%), Positives = 54/66 (81%)
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Structural Features: | pfam00313, CSD, 'Cold-shock' DNA-binding domain.
CD-Length = 67 residues, 98.5% aligned
Score = 103 bits (258), Expect = 4e-24
Identities = 35/66 (53%), Positives = 47/66 (71%)
COG1278, CspC, Cold shock proteins [Transcription]
CD-Length = 67 residues, 100.0% aligned
Score = 100 bits (250), Expect = 4e-23
Identities = 34/67 (50%), Positives = 43/67 (64%) |
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