ViewGene
Locus Name:
GeneID:
Location:

GeneID:5214
TrivialName: PA14_35550
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_35550
PAO1 Ortholog Locus:PA2245
Sequence Length:306
Protein Length:101
Start: 3160737
Stop: 3160432
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05633.1|AE004650_4 (AE004650) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 95/101 (94%), Positives = 97/101 (96%)
Sequence:
GTGCCGGCGCAGCAGGCCGAGCAGGCGGCCAATCTCGGTCTGGCAGGCTTCCAGTTCCTTGCGCAGGGTGTG
TTCGCGGCGCTGCTGCTCCAGCTTCACGCGTTCCAGTTCGGCGCGCGCCTCGCGGCGGATCTGCCGCTCGCG
CTCCTTGTCGGAATGCTCGGCGCCGAGGGCCTCCTCGGCCTTGCGCGCGCGGTACTCGCGCATCCGCTGGGC
GGCCGACTTGGCCTTGCCGCTCGGCTTGGGGCCGGGTTTGCTGGCTTTCATGAACGCCTCCATCTGCGTAAC
GTTACGCAATCAGAATAG
Translation:
MPAQQAEQAANLGLAGFQFLAQGVFAALLLQLHAFQFGARLAADLPLALLVGMLGAEGLLGLARAVLAHPLG
GRLGLAARLGAGFAGFHERLHLRNVTQSE*
AnnotationID:5219GeneID:5214
AnnotatorUID: danlee
Modification Date/Time: 2005-10-10 15:03:51
Gene Name:pslO
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA2245
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:15276




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27573




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5214
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7625
                           PA2245_tr
                           translation of PA2245
                           101
                           94.05
                           96.03
                           0
                           471.0
     

     
     
195105
                           gb|AAG05633.1|AE004650_4
                           (AE004650) hypothetical protein PA2245 [Pseudomonas aeruginosa PAO1]
                           101
                           93.06
                           96.03
                           0
                           468.0
     

     






      

          
GC ORFID: 48216How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2245Glimmer Score: 

          
Start: 1793179Stop: 1793484

          
Length: 306


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA2245 translation of PA2245Homolog Bit Score 186.0

          
Other Homologs:  t_PA2245 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGCCGGCGCAGCAGGCCGAGCAGGCGGCCAATCTCGGTCTGGCAGGCTTCCAGTTCCTTGCGCAGGGTGTG 
TTCGCGGCGCTGCTGCTCCAGCTTCACGCGTTCCAGTTCGGCGCGCGCCTCGCGGCGGATCTGCCGCTCGCG 
CTCCTTGTCGGAATGCTCGGCGCCGAGGGCCTCCTCGGCCTTGCGCGCGCGGTACTCGCGCATCCGCTGGGC 
GGCCGACTTGGCCTTGCCGCTCGGCTTGGGGCCGGGTTTGCTGGCTTTCATGAACGCCTCCATCTGCGTAAC 
GTTACGCAATCAGAATAG