ViewGene
Locus Name:
GeneID:
Location:

GeneID:5213
TrivialName: PA14_38790
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_38790
PAO1 Ortholog Locus:PA1988
Sequence Length:279
Protein Length:92
Start: 3460528
Stop: 3460250
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05376.1|AE004625_6 (AE004625) pyrroloquinoline quinone biosynthesis protein D [Pseudomonas aeruginosa PAO1]
Identities = 92/92 (100%), Positives = 92/92 (100%)
Sequence:
ATGAGCCTGCCGTCGCTCGACAGCGTGCCGATGCTGCGCCGGGGCTTCCGCTTCCAGTTCGAACCGGCCCAG
GACTGCCATGTGCTGCTCTACCCCGAAGGCATGGTCAAGCTCAACGACAGCGCCGGGGAAATCCTCAAGCTG
GTCGATGGCCGCCGCGACGTGGCGGCCATCGTCGCGGCGCTGCGCGAGCGTTTCCCCGAAGTCCCCGGCATA
GACGAAGACATCCTGGCGTTCCTCGAGGTGGCCCATGCGCAATTCTGGATCGAGCTGCAGTGA
Translation:
MSLPSLDSVPMLRRGFRFQFEPAQDCHVLLYPEGMVKLNDSAGEILKLVDGRRDVAAIVAALRERFPEVPGI
DEDILAFLEVAHAQFWIELQ*
AnnotationID:5218GeneID:5213
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 17:05:37
Gene Name:pqqD
Confidence Code:2
GeneProduct:pyrroloquinoline quinone biosynthesis protein D
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:coenzyme PQQ synthesis protein D
Functional Category Confidence Code:5
COGs:pfam05402
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAA41582.1| (X58778) pqqD [Klebsiella pneumoniae]
          Length = 92

 Score =  109 bits (273), Expect = 3e-24
 Identities = 50/82 (60%), Positives = 65/82 (79%)

>gb|AAN66008.1|AE016229_9 (AE016775) coenzyme PQQ synthesis protein D [Pseudomonas putida
          KT2440]
          Length = 91

 Score =  105 bits (262), Expect = 5e-23
 Identities = 51/85 (60%), Positives = 65/85 (76%)


>gb|AAN68289.1|AE016463_3 (AE016784) coenzyme PQQ synthesis protein D, putative
          [Pseudomonas putida KT2440]
          Length = 90

 Score = 96.7 bits (239), Expect = 2e-20
 Identities = 46/90 (51%), Positives = 62/90 (68%)








 
Structural Features:
pfam05402, PqqD, Coenzyme PQQ synthesis protein D (PqqD).
CD-Length = 82 residues, 100.0% aligned
Score =  119 bits (300), Expect = 5e-29
Identities = 51/82 (62%), Positives = 58/82 (70%)






   
Genomic Context:






   
Comment:


















    ReferenceID:10426




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27571




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32737




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5213_cdd.html


    		




 
URL:

















    ReferenceID:34371




  
Author/Investigator(s):
        Toyama H, Chistoserdova L, Lidstrom ME.





  
Title:
        Sequence analysis of pqq genes required for biosynthesis of pyrroloquinoline quinone in Methylobacterium extorquens AM1 and the purification of a biosynthetic intermediate.




  
PubMed:
        9043136


MedLine:
        




    
Source:
Microbiology. 1997 Feb;143 ( Pt 2):595-602.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9043136

















    ReferenceID:34374




  
Author/Investigator(s):
        Meulenberg JJ, Sellink E, Riegman NH, Postma PW.





  
Title:
        Nucleotide sequence and structure of the Klebsiella pneumoniae pqq operon.




  
PubMed:
        1313537


MedLine:
        




    
Source:
Mol Gen Genet. 1992 Mar;232(2):284-94.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1313537









           
Homologs By Global Alignment 

           

       



     
Gene ID:5213
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7624
                           PA1988_tr
                           translation of PA1988
                           92
                           99.99
                           99.99
                           0
                           471.0
     

     
     
195100
                           gb|AAG05376.1|AE004625_6
                           (AE004625) pyrroloquinoline quinone biosynthesis protein D [Pseudomonas aeruginosa PAO1]
                           92
                           99.99
                           99.99
                           0
                           471.0
     

     
     
195102
                           gb|AAN66008.1|AE016229_9
                           (AE016775) coenzyme PQQ synthesis protein D [Pseudomonas putida KT2440]
                           92
                           57.60
                           72.82
                           1
                           258.0
     

     
     
195101
                           emb|CAA41582.1|
                           (X58778) pqqD [Klebsiella pneumoniae]
                           95
                           52.63
                           69.47
                           6
                           267.0
     

     
     
195103
                           gb|AAC38152.1|
                           (AF007584) ORF1 [Rahnella aquatilis]
                           95
                           51.57
                           62.10
                           13
                           261.0
     

     






      

          
GC ORFID: 48215How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1988Glimmer Score: 

          
Start: 1493383Stop: 1493661

          
Length: 279


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1988 translation of PA1988Homolog Bit Score 186.0

          
Other Homologs:  t_PA1988 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCTGCCGTCGCTCGACAGCGTGCCGATGCTGCGCCGGGGCTTCCGCTTCCAGTTCGAACCGGCCCAG 
GACTGCCATGTGCTGCTCTACCCCGAAGGCATGGTCAAGCTCAACGACAGCGCCGGGGAAATCCTCAAGCTG 
GTCGATGGCCGCCGCGACGTGGCGGCCATCGTCGCGGCGCTGCGCGAGCGTTTCCCCGAAGTCCCCGGCATA 
GACGAAGACATCCTGGCGTTCCTCGAGGTGGCCCATGCGCAATTCTGGATCGAGCTGCAGTGA