ViewGene
Locus Name:
GeneID:
Location:

GeneID:5211
TrivialName: PA14_40560
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_40560
PAO1 Ortholog Locus:PA1852
Sequence Length:276
Protein Length:91
Start: 3622148
Stop: 3622423
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05241.1|AE004611_6 (AE004611) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 91/91 (100%), Positives = 91/91 (100%)
Sequence:
ATGAACGCTACGCTCCGTTTCAACGAGGCTTTGCTGATCACCGGGCGCGCCTTCCAGCCATACCAGTGCGTT
GCCTGGTCCGAGCTAGGCAGTGACGGCGGCCTGAGCCTGTCCGTAGTCGATCGCACCGGCACCCGCCTGCTG
GGCCGTGCACGCATTCCGAGCTCCGCCTACTCCGATCCGGAGCAGCTTGCCGGCCTGCTGCAACAGGCACGC
GAAGAACTCAGCCACAACGGCTACAACCTGCAGGACTGGAGTATGCCCAGCCAAGGCTGA
Translation:
MNATLRFNEALLITGRAFQPYQCVAWSELGSDGGLSLSVVDRTGTRLLGRARIPSSAYSDPEQLAGLLQQAR
EELSHNGYNLQDWSMPSQG*
AnnotationID:5216GeneID:5211
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 05:05:49
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1852
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:10422




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27567




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5211
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7621
                           PA1852_tr
                           translation of PA1852
                           91
                           99.99
                           99.99
                           0
                           471.0
     

     
     
195081
                           gb|AAG05241.1|AE004611_6
                           (AE004611) hypothetical protein PA1852 [Pseudomonas aeruginosa PAO1]
                           91
                           99.99
                           99.99
                           0
                           471.0
     

     
     
195083
                           gb|AAN69105.1|AE016544_3
                           (AE016787) conserved hypothetical protein [Pseudomonas putida KT2440]
                           91
                           53.84
                           65.93
                           3
                           250.0
     

     
     
195082
                           gb|AAO56632.1|
                           (AE016867) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           103
                           49.51
                           65.04
                           15
                           269.0
     

     






      

          
GC ORFID: 48213How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1852Glimmer Score: 

          
Start: 1331762Stop: 1331487

          
Length: 276


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1852 translation of PA1852Homolog Bit Score 186.0

          
Other Homologs:  psyr_15may02_Scaffold7_revised_gene7233 (ORF: BLASTX 112.0), t_PA1852 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACGCTACGCTCCGTTTCAACGAGGCTTTGCTGATCACCGGGCGCGCCTTCCAGCCATACCAGTGCGTT 
GCCTGGTCCGAGCTAGGCAGTGACGGCGGCCTGAGCCTGTCCGTAGTCGATCGCACCGGCACCCGCCTGCTG 
GGCCGTGCACGCATTCCGAGCTCCGCCTACTCCGATCCGGAGCAGCTTGCCGGCCTGCTGCAACAGGCACGC 
GAAGAACTCAGCCACAACGGCTACAACCTGCAGGACTGGAGTATGCCCAGCCAAGGCTGA