ViewGene

Locus Name:
GeneID:
Location:

GeneID:5210
TrivialName: PA14_43290
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_43290
PAO1 Ortholog Locus:PA1641
Sequence Length:279
Protein Length:92
Start: 3856612
Stop: 3856334
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05030.1|AE004592_1 (AE004592) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 92/92 (100%), Positives = 92/92 (100%)
Sequence:
ATGAAAACCTGGATCGTTCTGCCCGTCCTTGCCCTGACCCTGGCCGGCTGCGCCGGCAAGACCGCCTACCGG
GAGAACTGTGCCGACCAGCTGGACGCGGCCTGGAAGGAACTCGACCTGGCCAAGGCCGAAGGCTTCGCCGGC
ACCGTCAGCTACTCGAAGGCCCTGACCCTGCTCACCGGGGCCAAGACCCAGCAGCAGTTCGAAGCCTACGAG
GGCTGCACCAGCAAGGCCGAGAAGGCGCGCTTCTATATCCGCGAGTCGCGCGCCGGGCGCTGA
Translation:
MKTWIVLPVLALTLAGCAGKTAYRENCADQLDAAWKELDLAKAEGFAGTVSYSKALTLLTGAKTQQQFEAYE
GCTSKAEKARFYIRESRAGR*
AnnotationID:5215GeneID:5210
AnnotatorUID: diggins
Modification Date/Time: 2005-02-27 16:04:15
Gene Name:
Confidence Code:3
GeneProduct:putative lipoprotein
Cell Localization:()
Synonyms:PA1641
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN67919.1|AE016424_5 (AE016782) lipoprotein, putative [Pseudomonas putida KT2440]
          Length = 92

 Score =  164 bits (414), Expect = 1e-40
 Identities = 79/92 (85%), Positives = 84/92 (91%)

>gb|AAO55763.1| (AE016863) lipoprotein, putative [Pseudomonas syringae pv. tomato
          str. DC3000]
          Length = 92

 Score =  156 bits (394), Expect = 3e-38
 Identities = 75/92 (81%), Positives = 82/92 (89%)

Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:10420
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27565
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:5210

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7620 PA1641_tr translation of PA1641 92 99.99 99.99 0 473.0
195078 gb|AAG05030.1|AE004592_1 (AE004592) hypothetical protein PA1641 [Pseudomonas aeruginosa PAO1] 92 99.99 99.99 0 473.0
195079 gb|AAN67919.1|AE016424_5 (AE016782) lipoprotein, putative [Pseudomonas putida KT2440] 92 85.86 91.30 0 414.0
195080 gb|AAO55763.1| (AE016863) lipoprotein, putative [Pseudomonas syringae pv. tomato str. DC3000] 92 81.52 89.13 0 394.0
GC ORFID: 48212How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1641Glimmer Score:
Start: 1097297Stop: 1097575
Length: 279
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1641 translation of PA1641Homolog Bit Score 186.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene1039 (ORF: BLASTX 157.0), t_PA1641 (ORF: GLIMMER)
GC ORF Sequence
ATGAAAACCTGGATCGTTCTGCCCGTCCTTGCCCTGACCCTGGCCGGCTGCGCCGGCAAGACCGCCTACCGG
GAGAACTGTGCCGACCAGCTGGACGCGGCCTGGAAGGAACTCGACCTGGCCAAGGCCGAAGGCTTCGCCGGC
ACCGTCAGCTACTCGAAGGCCCTGACCCTGCTCACCGGGGCCAAGACCCAGCAGCAGTTCGAAGCCTACGAG
GGCTGCACCAGCAAGGCCGAGAAGGCGCGCTTCTATATCCGCGAGTCGCGCGCCGGGCGCTGA