ViewGene
Locus Name:
GeneID:
Location:

GeneID:521
TrivialName: PA14_10540
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_10540
PAO1 Ortholog Locus:PA4131
Sequence Length:1722
Protein Length:573
Start: 908542
Stop: 906821
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07518.1|AE004829_8 (AE004829) probable iron-sulfur protein [Pseudomonas aeruginosa PAO1]
Identities = 571/573 (99%), Positives = 571/573 (99%)
Sequence:
GTGTTCACTGGCACCCACTATCGCCCGCGTACAGACAGCGAAACAGCGGCAGATTCCGCCGAAAAAAACACA
TCAGATGGCCGACGGCGGCGAATTCGTGCCGCCTGCGACCGGTTGCCACGGGGCGCATATCTGTACTGCCCG
AGGTCACCCGGCAACCCGCGGCAATGCTGGGCCGCTGCTTTCCGGAGGCATCTGATACGGTTTTTCCCGCTC
GATCTGCCGCTGTTTCGCCCATCAGCCGGTTCCTATAGTCGCAACCGCCTCTCCAGCCTGATGGGCCTACGA
AAAATGAGCGAAAGAATTCCCGCGATCCAGGTCGAGCCCGCCGCACCGGCCGCTCCGTCGAAACAGCCGCCC
GCGCCCGGCAAGCTGCCGTCGGCGGTGAACGGCCCGATCTACACCCGCAGCTTCACCGGTCTGTTCCGCAAC
TTCCGCCGCCTCGGCGGCGGCCTGCTGTTCCTGCTGTTCTTCGGCACCCTGTGGCTGAACTGGAACGGCCGC
CAGGCGGTGCTCTGGGACCTGCCCGAACGCAAGTTCTACATTTTCGGCGCGACCTTCTGGCCGCAGGACTTC
ATCCTGCTCTCGGCGCTGCTGATCATCGCCGCCTTCGGCCTGTTCTTCATCACCGTGTTCGCCGGCCGCGTC
TGGTGCGGCTATACCTGCCCGCAGAGCGTGTGGACCTGGGTGTTCATGTGGTGCGAGAAGGTCACCGAGGGC
GACCGCAATGCGCGGATCAAGCTCGACCAGGGTCCGGCGAGCGCCGCCAAGCTCTTGCGCAAAACGGCCAAG
CACGCGCTGTGGCTGGGTGTGAGCCTGGTCACGGCGATCACCTTCATCGGCTACTTCACTCCGGTGCGGCCG
CTGGTGGCCGACCTGTTCAGCTTCCAGCTGGACCTGGAAAGCCTGTTCTGGGTGCTGTTCTTCACCGCCGCC
ACCTATGTCAACGCCGGCTGGCTGCGCGAGCAGGTGTGCATCCACATGTGCCCCTACTCGCGCTTCCAGAGC
GTGATGTTCGACAAGGACACCCTGATCGTGTCCTACGATGCCGCCCGCGGCGAGTCCCGCGGCGCCCGCAAG
AAAGGCAGCGATCCGCGCGCCCAGGGGCTCGGCGACTGCATCGACTGCCAGCAGTGCGTGCAGGTCTGCCCC
ACCGGCATCGACATCCGCGACGGCCTGCAGATCGCCTGCATCGGCTGCGCCGCCTGCGTCGACGCCTGCGAC
TCGATCATGGACAAGATGGGCTATGAACGCGGCCTGGTGCGCTACACCTCGGAACGCGCCCTGGAAGGTGGC
CAGACCCGCTTCCTGCGTCCACGCCTGGTCGGCTACGCGGCGGTGATGCTGGCGATGATCGGCGCCTTCGTC
GTCGCCCTGGATGCCCGCCCGCTGGCCTCGCTGGACGTGACCCGCGACCGTGGGCTGTTCCGCGAGAACGCC
GCCGGGCAGATCGAGAACATCTACACCCTCAAGGTCATCAACAAGACCCAGCAGCCGCAGCGCTATCGCCTG
CAACTCGACGACGCGCCGGAGTTCCGCCTGCAGGGCGAGCACACCCTGAGCCTGAAGCCCGGCGAGATCCTC
GACTTCCCGGTGTCGGTGGCCTCTACCGCCGAACGCGCCAGGGCCGGCTCGCAACCGCTGGCGTTCAGCCTG
CGCGGCATCGACGACCCGAGCCTGGCGGTCGGCAGCACCAGCACCTTCGTTTCGCCGGCGCGCTGA
Translation:
MFTGTHYRPRTDSETAADSAEKNTSDGRRRRIRAACDRLPRGAYLYCPRSPGNPRQCWAAAFRRHLIRFFPL
DLPLFRPSAGSYSRNRLSSLMGLRKMSERIPAIQVEPAAPAAPSKQPPAPGKLPSAVNGPIYTRSFTGLFRN
FRRLGGGLLFLLFFGTLWLNWNGRQAVLWDLPERKFYIFGATFWPQDFILLSALLIIAAFGLFFITVFAGRV
WCGYTCPQSVWTWVFMWCEKVTEGDRNARIKLDQGPASAAKLLRKTAKHALWLGVSLVTAITFIGYFTPVRP
LVADLFSFQLDLESLFWVLFFTAATYVNAGWLREQVCIHMCPYSRFQSVMFDKDTLIVSYDAARGESRGARK
KGSDPRAQGLGDCIDCQQCVQVCPTGIDIRDGLQIACIGCAACVDACDSIMDKMGYERGLVRYTSERALEGG
QTRFLRPRLVGYAAVMLAMIGAFVVALDARPLASLDVTRDRGLFRENAAGQIENIYTLKVINKTQQPQRYRL
QLDDAPEFRLQGEHTLSLKPGEILDFPVSVASTAERARAGSQPLAFSLRGIDDPSLAVGSTSTFVSPAR*
AnnotationID:530GeneID:521
AnnotatorUID: diggins
Modification Date/Time: 2005-03-30 13:01:19
Gene Name:
Confidence Code:3
GeneProduct:putative iron-sulfur cluster-binding protein
Cell Localization:()
Synonyms:fixG
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:putative polyferredoxin
Functional Category Confidence Code:5
COGs:COG0348
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69144.1|AE016548_3 (AE016787) iron-sulfur cluster-binding protein [Pseudomonas putida
           KT2440]
          Length = 467

 Score =  642 bits (1655), Expect = 0.0
 Identities = 310/474 (65%), Positives = 367/474 (77%), Gaps = 10/474 (2%)

>gb|AAO55516.1| (AE016862) FixG-related protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 470

 Score =  596 bits (1536), Expect = e-169
 Identities = 279/439 (63%), Positives = 338/439 (76%), Gaps = 1/439 (0%)

>gb|AAN57696.1|AE015906_3 (AE015906) iron-sulfur cluster-binding protein [Shewanella
           oneidensis MR-1]
          Length = 475

 Score =  463 bits (1192), Expect = e-129
 Identities = 223/441 (50%), Positives = 293/441 (66%), Gaps = 2/441 (0%)






 
Structural Features:
COG0348, NapH, Polyferredoxin [Energy production and conversion]
CD-Length = 386 residues,  98.4% aligned
Score =  320 bits (821), Expect = 3e-88
Identities = 155/407 (38%), Positives = 197/407 (48%), Gaps = 33/407 (8%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14151




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18187




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36862




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:521_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:521
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
915
                           PA4131_tr
                           translation of PA4131
                           573
                           99.65
                           99.65
                           0
                           3012.0
     

     
     
36960
                           gb|AAG07518.1|AE004829_8
                           (AE004829) probable iron-sulfur protein [Pseudomonas aeruginosa PAO1]
                           573
                           99.47
                           99.65
                           0
                           3009.0
     

     
     
36961
                           gb|AAN69144.1|AE016548_3
                           (AE016787) iron-sulfur cluster-binding protein [Pseudomonas putida KT2440]
                           574
                           54.52
                           63.93
                           108
                           1661.0
     

     
     
916
                           PA1551_tr
                           translation of PA1551
                           578
                           50.00
                           60.72
                           112
                           1568.0
     

     
     
36962
                           gb|AAG04940.1|AE004583_5
                           (AE004583) probable ferredoxin [Pseudomonas aeruginosa PAO1]
                           578
                           50.00
                           60.72
                           112
                           1568.0
     

     






      

          
GC ORFID: 43523How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4131Glimmer Score: 

          
Start: 4045395Stop: 4047116

          
Length: 1722


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4131 translation of PA4131Homolog Bit Score 1164.0

          
Other Homologs:  t_PA1551 (ORF: BLASTX 605.0), psyr_15may02_Scaffold8_revised_gene7531 (ORF: BLASTX 602.0), t_PA4131 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGTTCACTGGCACCCACTATCGCCCGCGTACAGACAGCGAAACAGCGGCAGATTCCGCCGAAAAAAACACA 
TCAGATGGCCGACGGCGGCGAATTCGTGCCGCCTGCGACCGGTTGCCACGGGGCGCATATCTGTACTGCCCG 
AGGTCACCCGGCAACCCGCGGCAATGCTGGGCCGCTGCTTTCCGGAGGCATCTGATACGGTTTTTCCCGCTC 
GATCTGCCGCTGTTTCGCCCATCAGCCGGTTCCTATAGTCGCAACCGCCTCTCCAGCCTGATGGGCCTACGA 
AAAATGAGCGAAAGAATTCCCGCGATCCAGGTCGAGCCCGCCGCACCGGCCGCTCCGTCGAAACAGCCGCCC 
GCGCCCGGCAAGCTGCCGTCGGCGGTGAACGGCCCGATCTACACCCGCAGCTTCACCGGTCTGTTCCGCAAC 
TTCCGCCGCCTCGGCGGCGGCCTGCTGTTCCTGCTGTTCTTCGGCACCCTGTGGCTGAACTGGAACGGCCGC 
CAGGCGGTGCTCTGGGACCTGCCCGAACGCAAGTTCTACATTTTCGGCGCGACCTTCTGGCCGCAGGACTTC 
ATCCTGCTCTCGGCGCTGCTGATCATCGCCGCCTTCGGCCTGTTCTTCATCACCGTGTTCGCCGGCCGCGTC 
TGGTGCGGCTATACCTGCCCGCAGAGCGTGTGGACCTGGGTGTTCATGTGGTGCGAGAAGGTCACCGAGGGC 
GACCGCAATGCGCGGATCAAGCTCGACCAGGGTCCGGCGAGCGCCGCCAAGCTCTTGCGCAAAACGGCCAAG 
CACGCGCTGTGGCTGGGTGTGAGCCTGGTCACGGCGATCACCTTCATCGGCTACTTCACTCCGGTGCGGCCG 
CTGGTGGCCGACCTGTTCAGCTTCCAGCTGGACCTGGAAAGCCTGTTCTGGGTGCTGTTCTTCACCGCCGCC 
ACCTATGTCAACGCCGGCTGGCTGCGCGAGCAGGTGTGCATCCACATGTGCCCCTACTCGCGCTTCCAGAGC 
GTGATGTTCGACAAGGACACCCTGATCGTGTCCTACGATGCCGCCCGCGGCGAGTCCCGCGGCGCCCGCAAG 
AAAGGCAGCGATCCGCGCGCCCAGGGGCTCGGCGACTGCATCGACTGCCAGCAGTGCGTGCAGGTCTGCCCC 
ACCGGCATCGACATCCGCGACGGCCTGCAGATCGCCTGCATCGGCTGCGCCGCCTGCGTCGACGCCTGCGAC 
TCGATCATGGACAAGATGGGCTATGAACGCGGCCTGGTGCGCTACACCTCGGAACGCGCCCTGGAAGGTGGC 
CAGACCCGCTTCCTGCGTCCACGCCTGGTCGGCTACGCGGCGGTGATGCTGGCGATGATCGGCGCCTTCGTC 
GTCGCCCTGGATGCCCGCCCGCTGGCCTCGCTGGACGTGACCCGCGACCGTGGGCTGTTCCGCGAGAACGCC 
GCCGGGCAGATCGAGAACATCTACACCCTCAAGGTCATCAACAAGACCCAGCAGCCGCAGCGCTATCGCCTG 
CAACTCGACGACGCGCCGGAGTTCCGCCTGCAGGGCGAGCACACCCTGAGCCTGAAGCCCGGCGAGATCCTC 
GACTTCCCGGTGTCGGTGGCCTCTACCGCCGAACGCGCCAGGGCCGGCTCGCAACCGCTGGCGTTCAGCCTG 
CGCGGCATCGACGACCCGAGCCTGGCGGTCGGCAGCACCAGCACCTTCGTTTCGCCGGCGCGCTGA