ViewGene

Locus Name:
GeneID:
Location:

GeneID:5208
TrivialName: PA14_01510
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_01510
PAO1 Ortholog Locus:PA0124
Sequence Length:282
Protein Length:93
Start: 141762
Stop: 141481
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03514.1|AE004450_9 (AE004450) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 93/93 (100%), Positives = 93/93 (100%)
Sequence:
ATGAGCCTGAAGTGGACCCGCAAGGCGGCCGCCGACCTGGACGCCATCTACGACCATTACGTCGTGCTGATC
GGCCCGGAAAAAGCCCTGAAAGCCGTCCAGGACATCGTCGAGCAGGTGAAACCGCTGCAGCAGGTAGCCAAC
CAGGGGGCAGGGCGGCCCAGCGAGGTGCCAGGCGTACGCACCCTGACCCTGGAGCGCTGGCCGTTCAGCGCC
CCTTTTCGGGTAAAAGGCAAGGAAATCCAGATTTTGCGCATCGACAGGGTCGAAATTACCCCCTGA
Translation:
MSLKWTRKAAADLDAIYDHYVVLIGPEKALKAVQDIVEQVKPLQQVANQGAGRPSEVPGVRTLTLERWPFSA
PFRVKGKEIQILRIDRVEITP*
AnnotationID:5213GeneID:5208
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 19:07:48
Gene Name:
Confidence Code:3
GeneProduct:putative plasmid stabilisation system protein
Cell Localization:()
Synonyms:PA0124
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3668
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG3668, ParE, Plasmid stabilization system protein 
CD-Length = 98 residues,  85.7% aligned
Score = 57.7 bits (139), Expect = 3e-10
Identities = 20/86 (23%), Positives = 33/86 (38%), Gaps = 2/86 (2%)
Genomic Context:
Comment:
ReferenceID:10416
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27561
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33494
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:5208_cdd.html
URL:
Homologs By Global Alignment
Gene ID:5208

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7618 PA0124_tr translation of PA0124 93 99.99 99.99 0 474.0
195076 gb|AAG03514.1|AE004450_9 (AE004450) hypothetical protein PA0124 [Pseudomonas aeruginosa PAO1] 93 99.99 99.99 0 474.0
GC ORFID: 48210How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0124Glimmer Score:
Start: 5943101Stop: 5942820
Length: 282
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0124 translation of PA0124Homolog Bit Score 187.0
Other Homologs: t_PA0124 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCCTGAAGTGGACCCGCAAGGCGGCCGCCGACCTGGACGCCATCTACGACCATTACGTCGTGCTGATC
GGCCCGGAAAAAGCCCTGAAAGCCGTCCAGGACATCGTCGAGCAGGTGAAACCGCTGCAGCAGGTAGCCAAC
CAGGGGGCAGGGCGGCCCAGCGAGGTGCCAGGCGTACGCACCCTGACCCTGGAGCGCTGGCCGTTCAGCGCC
CCTTTTCGGGTAAAAGGCAAGGAAATCCAGATTTTGCGCATCGACAGGGTCGAAATTACCCCCTGA