ViewGene
Locus Name:
GeneID:
Location:

GeneID:5206
TrivialName: PA14_08890
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_08890
PAO1 Ortholog Locus:PA4259
Sequence Length:276
Protein Length:91
Start: 761956
Stop: 762231
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07647.1|AE004841_25 (AE004841) 30S ribosomal protein S19 [Pseudomonas aeruginosa PAO1]
Identities = 91/91 (100%), Positives = 91/91 (100%)
Sequence:
GTGCCACGTTCACTGAAAAAAGGTCCGTTTATCGATCTTCACCTGTTGAAGAAGGTCGAAGTCGCGGTGGAA
AAGAACGACCGCAAGCCGATCAAGACCTGGTCGCGTCGTTCGATGATTCTGCCGCATATGGTTGGTCTGACC
ATCGCCGTGCACAACGGCCGTCAACACGTACCGGTTCTCGTCAACGAGGACATGGTCGGCCACAAACTGGGC
GAGTTCGCCGCTACCCGCACCTACCGCGGGCATGCTGCGGACAAGAAAGCCAAGCGTTAA
Translation:
MPRSLKKGPFIDLHLLKKVEVAVEKNDRKPIKTWSRRSMILPHMVGLTIAVHNGRQHVPVLVNEDMVGHKLG
EFAATRTYRGHAADKKAKR*
AnnotationID:5211GeneID:5206
AnnotatorUID: diggins
Modification Date/Time: 2005-04-03 12:12:44
Gene Name:rpsS
Confidence Code:2
GeneProduct:30S ribosomal protein S19
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0185,pfam00203
Secondary Functional Category(ies):translation, ribosomal structure and biogenesis
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66088.1|AE016238_6 (AE016775) ribosomal protein S19 [Pseudomonas putida KT2440]
          Length = 91

 Score =  181 bits (458), Expect = 1e-45
 Identities = 87/91 (95%), Positives = 88/91 (96%)

>gb|AAO54172.1| (AE016858) ribosomal protein S19 [Pseudomonas syringae pv. tomato
          str. DC3000]
          Length = 91

 Score =  177 bits (448), Expect = 1e-44
 Identities = 84/91 (92%), Positives = 87/91 (95%)

>gb|AAO09266.1|AE016799_164 (AE016799) Ribosomal protein S19 [Vibrio vulnificus CMCP6]
          Length = 92

 Score =  165 bits (417), Expect = 6e-41
 Identities = 77/91 (84%), Positives = 84/91 (92%)








 
Structural Features:
COG0185, RpsS, Ribosomal protein S19 
[Translation, ribosomal structure and biogenesis]
CD-Length = 93 residues,  98.9% aligned
Score =  139 bits (353), Expect = 5e-35
Identities = 66/92 (71%), Positives = 73/92 (79%), Gaps = 1/92 (1%)

pfam00203, Ribosomal_S19, Ribosomal protein S19.
CD-Length = 81 residues, 100.0% aligned
Score =  119 bits (299), Expect = 8e-29
Identities = 55/81 (67%), Positives = 66/81 (81%)






   
Genomic Context:






   
Comment:


















    ReferenceID:15274




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27557




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36541




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5206_cdd.html


    		




 
URL:

















    ReferenceID:36737




  
Author/Investigator(s):
        Zurawski G, Zurawski SM.





  
Title:
        Structure of the Escherichia coli S10 ribosomal protein operon.




  
PubMed:
        3892488


MedLine:
        




    
Source:
Nucleic Acids Res. 1985 Jun 25;13(12):4521-6.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=3892488

















    ReferenceID:36747




  
Author/Investigator(s):
        Yaguchi M, Wittmann HG.





  
Title:
        Primary structure of protein S19 from the small ribosomal subunit of Escherichia coli.




  
PubMed:
        348496


MedLine:
        




    
Source:
FEBS Lett. 1978 Apr 15;88(2):227-30.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=78169207&dopt=Abstract









           
Homologs By Global Alignment 

           

       



     
Gene ID:5206
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7616
                           PA4259_tr
                           translation of PA4259
                           91
                           99.99
                           99.99
                           0
                           474.0
     

     
     
194926
                           gb|AAG07647.1|AE004841_25
                           (AE004841) 30S ribosomal protein S19 [Pseudomonas aeruginosa PAO1]
                           91
                           98.90
                           99.99
                           0
                           471.0
     

     
     
194927
                           gb|AAN66088.1|AE016238_6
                           (AE016775) ribosomal protein S19 [Pseudomonas putida KT2440]
                           91
                           94.50
                           96.70
                           0
                           454.0
     

     
     
194928
                           gb|AAO54172.1|
                           (AE016858) ribosomal protein S19 [Pseudomonas syringae pv. tomato str. DC3000]
                           91
                           91.20
                           95.60
                           0
                           444.0
     

     
     
194937
                           emb|CAE17094.1|
                           (BX571874) 30S ribosomal protein S19 [Photorhabdus luminescens subsp. laumondii TTO1]
                           92
                           82.60
                           91.30
                           1
                           409.0
     

     






      

          
GC ORFID: 48208How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4259Glimmer Score: 

          
Start: 4191983Stop: 4191708

          
Length: 276


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA4259 translation of PA4259Homolog Bit Score 187.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5189 (ORF: BLASTX 178.0), t_PA4259 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGCCACGTTCACTGAAAAAAGGTCCGTTTATCGATCTTCACCTGTTGAAGAAGGTCGAAGTCGCGGTGGAA 
AAGAACGACCGCAAGCCGATCAAGACCTGGTCGCGTCGTTCGATGATTCTGCCGCATATGGTTGGTCTGACC 
ATCGCCGTGCACAACGGCCGTCAACACGTACCGGTTCTCGTCAACGAGGACATGGTCGGCCACAAACTGGGC 
GAGTTCGCCGCTACCCGCACCTACCGCGGGCATGCTGCGGACAAGAAAGCCAAGCGTTAA