ViewGene
Locus Name:
GeneID:
Location:

GeneID:5205
TrivialName: PA14_12110
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12110
PAO1 Ortholog Locus:PA3998
Sequence Length:282
Protein Length:93
Start: 1047339
Stop: 1047620
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07385.1|AE004817_9 (AE004817) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 93/93 (100%), Positives = 93/93 (100%)
Sequence:
ATGACCGATACCCCTGACGTTCAACCCCCGAAAATCGAATTCCCCTGCGAGCGCTATCCGATCAAGGTGATC
GGCGACGCCGGCGAAGGTTTCTCCGACCTGGTCGTGGAAATCATCCAGCGCCACGCGCCGGATCTCGACGTC
GAGACCCTGGTGGTCCGTGACAGCAGCAAGGGGCGATTCCTCTCGGTGCAGGTGCTGATCACCGCCACCGAT
GTCGACCAACTGCAAGCCATCCATAACGACCTGCGCGCGACCGGACGCGTGCACATGGTGCTCTGA
Translation:
MTDTPDVQPPKIEFPCERYPIKVIGDAGEGFSDLVVEIIQRHAPDLDVETLVVRDSSKGRFLSVQVLITATD
VDQLQAIHNDLRATGRVHMVL*
AnnotationID:5210GeneID:5205
AnnotatorUID: urbach
Modification Date/Time: 2004-09-01 17:05:48
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2921,pfam04359
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
gnl|CDD|12270 COG2921, COG2921, Uncharacterized conserved protein [Function unknown]
Length = 90
Score =  112 bits (282), Expect = 1e-26
Identities = 39/93 (41%), Positives = 56/93 (60%), Gaps = 3/93 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:10410




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27555




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5205
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7615
                           PA3998_tr
                           translation of PA3998
                           93
                           99.99
                           99.99
                           0
                           475.0
     

     
     
194924
                           gb|AAG07385.1|AE004817_9
                           (AE004817) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           93
                           99.99
                           99.99
                           0
                           475.0
     

     
     
194925
                           gb|AAD32235.1|AF147448_6
                           (AF147448) unknown [Pseudomonas aeruginosa]
                           93
                           99.99
                           99.99
                           0
                           475.0
     

     






      

          
GC ORFID: 48207How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3998Glimmer Score: 

          
Start: 3906599Stop: 3906318

          
Length: 282


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3998 translation of PA3998Homolog Bit Score 187.0

          
Other Homologs:  t_PA3998 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCGATACCCCTGACGTTCAACCCCCGAAAATCGAATTCCCCTGCGAGCGCTATCCGATCAAGGTGATC 
GGCGACGCCGGCGAAGGTTTCTCCGACCTGGTCGTGGAAATCATCCAGCGCCACGCGCCGGATCTCGACGTC 
GAGACCCTGGTGGTCCGTGACAGCAGCAAGGGGCGATTCCTCTCGGTGCAGGTGCTGATCACCGCCACCGAT 
GTCGACCAACTGCAAGCCATCCATAACGACCTGCGCGCGACCGGACGCGTGCACATGGTGCTCTGA