ViewGene

Locus Name:
GeneID:
Location:

GeneID:5204
TrivialName: PA14_21670
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_21670
PAO1 Ortholog Locus:PA3274
Sequence Length:288
Protein Length:95
Start: 1878749
Stop: 1878462
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06662.1|AE004749_11 (AE004749) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 95/95 (100%), Positives = 95/95 (100%)
Sequence:
ATGAAACCGCTTTTCGCCCTCGCCAGCGCCTGCGCCCTGCTGGTCGCCACGCCGGTCTTCGCCTGTTCCGAA
GCGGAGGCGGAAAAGATGGGCAAGGAAGTCGCCACCAAGGTCGCCTCGATCACCCAGAAGAACCCGCAACGG
GCCAGGGAACTCAACGAGCAGTTGCGCCAGCGCCAGGAAGCCCGCTCGGAACAGAACCGGCCGAGCGATTGC
GATGCCTACGCGCAGATGCTCAAGGAACTGGATCAGGAAAAAGGTGACGTACAGCGCAACACTTCGCAGTGA
Translation:
MKPLFALASACALLVATPVFACSEAEAEKMGKEVATKVASITQKNPQRARELNEQLRQRQEARSEQNRPSDC
DAYAQMLKELDQEKGDVQRNTSQ*
AnnotationID:5209GeneID:5204
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 18:06:04
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3274
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:10408
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27553
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:5204

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7614 PA3274_tr translation of PA3274 95 99.99 99.99 0 475.0
194923 gb|AAG06662.1|AE004749_11 (AE004749) hypothetical protein PA3274 [Pseudomonas aeruginosa PAO1] 95 99.99 99.99 0 475.0
GC ORFID: 48206How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3274Glimmer Score:
Start: 3075182Stop: 3075469
Length: 288
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3274 translation of PA3274Homolog Bit Score 187.0
Other Homologs: t_PA3274 (ORF: GLIMMER)
GC ORF Sequence
ATGAAACCGCTTTTCGCCCTCGCCAGCGCCTGCGCCCTGCTGGTCGCCACGCCGGTCTTCGCCTGTTCCGAA
GCGGAGGCGGAAAAGATGGGCAAGGAAGTCGCCACCAAGGTCGCCTCGATCACCCAGAAGAACCCGCAACGG
GCCAGGGAACTCAACGAGCAGTTGCGCCAGCGCCAGGAAGCCCGCTCGGAACAGAACCGGCCGAGCGATTGC
GATGCCTACGCGCAGATGCTCAAGGAACTGGATCAGGAAAAAGGTGACGTACAGCGCAACACTTCGCAGTGA