ViewGene

Locus Name:
GeneID:
Location:

GeneID:5203
TrivialName: PA14_35000
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_35000
PAO1 Ortholog Locus:PA2288
Sequence Length:288
Protein Length:95
Start: 3116640
Stop: 3116927
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05676.1|AE004654_7 (AE004654) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 93/95 (97%), Positives = 93/95 (97%)
Sequence:
ATGAGCCACAACCTTGCCGAACTGCCGCTGTCCCGACGCCGCGCCCTGGAGCGCGAGAAACAGGCCTGCCTG
CGCCTCCACCTGTCCCGCAATCGTGCCAGCGAACGCCTGGAGCGCGCCGTGCGCGACGAAGTCGAGCGCCTG
CTGGGTGCCCGCGAACGCCAGGGGGCCGGCTGGCCGGAGTGGGTCAGCGCGGAACTCTGCGTGGCGGACGAC
CCGCTCTTCGTGCGCAAGGTGGTGGCGCGCCTGAAAGCCGCGGTGGACTGGCAACGCCAGCGCGCAGCCTGA
Translation:
MSHNLAELPLSRRRALEREKQACLRLHLSRNRASERLERAVRDEVERLLGARERQGAGWPEWVSAELCVADD
PLFVRKVVARLKAAVDWQRQRAA*
AnnotationID:5208GeneID:5203
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 11:11:00
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2288
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:10406
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27551
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:5203

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7613 PA2288_tr translation of PA2288 95 97.89 97.89 0 474.0
194922 gb|AAG05676.1|AE004654_7 (AE004654) hypothetical protein PA2288 [Pseudomonas aeruginosa PAO1] 95 97.89 97.89 0 474.0
GC ORFID: 48205How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2288Glimmer Score:
Start: 1837276Stop: 1836989
Length: 288
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2288 translation of PA2288Homolog Bit Score 187.0
Other Homologs: t_PA2288 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCCACAACCTTGCCGAACTGCCGCTGTCCCGACGCCGCGCCCTGGAGCGCGAGAAACAGGCCTGCCTG
CGCCTCCACCTGTCCCGCAATCGTGCCAGCGAACGCCTGGAGCGCGCCGTGCGCGACGAAGTCGAGCGCCTG
CTGGGTGCCCGCGAACGCCAGGGGGCCGGCTGGCCGGAGTGGGTCAGCGCGGAACTCTGCGTGGCGGACGAC
CCGCTCTTCGTGCGCAAGGTGGTGGCGCGCCTGAAAGCCGCGGTGGACTGGCAACGCCAGCGCGCAGCCTGA