ViewGene
Locus Name:
GeneID:
Location:

GeneID:5202
TrivialName: PA14_49530
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_49530
PAO1 Ortholog Locus:
Sequence Length:369
Protein Length:122
Start: 4405954
Stop: 4406322
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04538.1|AE004545_1 (AE004545) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 98/118 (83%), Positives = 103/118 (87%)
Sequence:
ATGGACGCCAAAGCTCTGCTCCTCGGCAGCCTCTGCCTGGCCGCCCCATTCGCCGACGCGGCGACGCTCGAC
AATGCCCTCTCCGCCTGCCTCGCCGCCCGGCTCGGTGCACCGCACACGGCGGAGGGCCAGTTGCACCAGCCA
ATCATCCTTGAGGCCCGGCGCTCCACCGGCGAATGCGGCTGTACCTCAGCGCTGGTGCGATATCGGCTGCTG
GCCATGCATGCCAATGCGAAGGCACAGGTCCTTCAGGAAGGTCTGCTCGACGGTCGCTACGAAGGCACCCGT
ACCCTAACGCTGGCAGCGGATGCGCAACTGGCGGCCGACAGCACGCTCGTGGTACGTCTTGGTTGCGCCGTC
GCCGAATGA
Translation:
MDAKALLLGSLCLAAPFADAATLDNALSACLAARLGAPHTAEGQLHQPIILEARRSTGECGCTSALVRYRLL
AMHANAKAQVLQEGLLDGRYEGTRTLTLAADAQLAADSTLVVRLGCAVAE*
AnnotationID:5207GeneID:5202
AnnotatorUID: danlee
Modification Date/Time: 2004-09-13 15:03:44
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA1149
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4893
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
Best match to PAO1 PA1149 in N-terminal portion; more divergence at C-terminal end.






 
Structural Features:
COG4893, Uncharacterized protein conserved in bacteria [Function unknown]
        CD-Length = 123 residues,  96.7% aligned
        Score =  127 bits (321), Expect = 3e-31






   
Genomic Context:






   
Comment:


















    ReferenceID:10404




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27549




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5202
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7612
                           PA1149_tr
                           translation of PA1149
                           122
                           80.32
                           85.24
                           0
                           474.0
     

     
     
194921
                           gb|AAG04538.1|AE004545_1
                           (AE004545) hypothetical protein PA1149 [Pseudomonas aeruginosa PAO1]
                           122
                           80.32
                           85.24
                           0
                           474.0
     

     






      

          
GC ORFID: 48204How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1149Glimmer Score: 

          
Start: 547954Stop: 547586

          
Length: 369


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1149 translation of PA1149Homolog Bit Score 187.0

          
Other Homologs:  t_PA1149 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGACGCCAAAGCTCTGCTCCTCGGCAGCCTCTGCCTGGCCGCCCCATTCGCCGACGCGGCGACGCTCGAC 
AATGCCCTCTCCGCCTGCCTCGCCGCCCGGCTCGGTGCACCGCACACGGCGGAGGGCCAGTTGCACCAGCCA 
ATCATCCTTGAGGCCCGGCGCTCCACCGGCGAATGCGGCTGTACCTCAGCGCTGGTGCGATATCGGCTGCTG 
GCCATGCATGCCAATGCGAAGGCACAGGTCCTTCAGGAAGGTCTGCTCGACGGTCGCTACGAAGGCACCCGT 
ACCCTAACGCTGGCAGCGGATGCGCAACTGGCGGCCGACAGCACGCTCGTGGTACGTCTTGGTTGCGCCGTC 
GCCGAATGA