ViewGene
Locus Name:
GeneID:
Location:

GeneID:5200
TrivialName: PA14_57830
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_57830
PAO1 Ortholog Locus:PA4452
Sequence Length:309
Protein Length:102
Start: 5149746
Stop: 5149438
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07840.1|AE004859_9 (AE004859) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 101/102 (99%), Positives = 102/102 (100%)
Sequence:
ATGAGCCAGGCCAGCCTGCGCGAAGGCGCGGCCGGCGAACTGCAGCTCGCCGGCGTGCTCGACTACAGCAGC
GGGCCGGCGTTGCGCGAGCAGGGCGGTCGGCTGATCCGCGCCAGCCAGGCGGCGGAACTGGTCGTCGACTGC
TCGGCGGTGGAGCGCTCCAGCAGCGTGGGCATTTCCCTGTTGCTGGCCTTCATGCGCGACGCACGCAAGGCC
GGCAAGGTCCTGAGCGTCAGGGCCTTGCCGGACGACATGCGGGAGATTGCCAAGGTCAGCAGCCTTCTGGAG
ATCCTGCCTCTGCAGGAATGA
Translation:
MSQASLREGAAGELQLAGVLDYSSGPALREQGGRLIRASQAAELVVDCSAVERSSSVGISLLLAFMRDARKA
GKVLSVRALPDDMREIAKVSSLLEILPLQE*
AnnotationID:5205GeneID:5200
AnnotatorUID: diggins
Modification Date/Time: 2005-05-03 06:06:10
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4452
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10400




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27545




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31490




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5200_cdd.html


    		




 
URL:

















    ReferenceID:31491




  
Author/Investigator(s):
        





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type: 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5200
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7610
                           PA4452_tr
                           translation of PA4452
                           102
                           99.01
                           99.99
                           0
                           477.0
     

     
     
194916
                           gb|AAG07840.1|AE004859_9
                           (AE004859) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           102
                           99.01
                           99.99
                           0
                           477.0
     

     
     
194917
                           gb|AAD17961.1|
                           (AF106002) toluene tolerance protein Ttg2E [Pseudomonas putida]
                           102
                           60.78
                           75.49
                           2
                           293.0
     

     
     
194919
                           gb|AAN66587.1|AE016286_11
                           (AE016777) toluene-tolerance protein [Pseudomonas putida KT2440]
                           102
                           58.82
                           72.54
                           2
                           282.0
     

     
     
194918
                           gb|AAO57892.1|
                           (AE016872) STAS domain protein [Pseudomonas syringae pv. tomato str. DC3000]
                           102
                           55.88
                           79.41
                           1
                           294.0
     

     






      

          
GC ORFID: 48202How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4452Glimmer Score: 

          
Start: 4413425Stop: 4413117

          
Length: 309


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4452 translation of PA4452Homolog Bit Score 188.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5523 (ORF: BLASTX 118.0), t_PA4452 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCAGGCCAGCCTGCGCGAAGGCGCGGCCGGCGAACTGCAGCTCGCCGGCGTGCTCGACTACAGCAGC 
GGGCCGGCGTTGCGCGAGCAGGGCGGTCGGCTGATCCGCGCCAGCCAGGCGGCGGAACTGGTCGTCGACTGC 
TCGGCGGTGGAGCGCTCCAGCAGCGTGGGCATTTCCCTGTTGCTGGCCTTCATGCGCGACGCACGCAAGGCC 
GGCAAGGTCCTGAGCGTCAGGGCCTTGCCGGACGACATGCGGGAGATTGCCAAGGTCAGCAGCCTTCTGGAG 
ATCCTGCCTCTGCAGGAATGA